Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,939,987 T→C 100% P35P (CCA→CCG ygfX ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,939,9870TC92.6% 22.5 / ‑4.7 13P35P (CCA→CCGygfXhypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (12/0);  total (13/0)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CCATCCATAACGGGGTGTAACTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCA  >  minE/1939962‑1940033
                         |                                              
ccatccatAACGGGGTGTAACTGAGCGGCCAGGGCATGAGTAAAATAACAGCGGCAAc                >  1:1808130/1‑58 (MQ=255)
ccatccatAACGGGGTGTAACTGAGCGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGa      >  1:1117509/1‑68 (MQ=255)
ccatccatAACGGGGTGTAACTGAGCGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGa      >  1:1886790/1‑68 (MQ=255)
ccatccatAACGGGGTGTAACTGAGCGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGa      >  1:1912883/1‑68 (MQ=255)
ccatccatAACGGGGTGTAACTGAGCGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGa      >  1:216937/1‑68 (MQ=255)
ccatccatAACGGGGTGTAACTGAGCGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGa      >  1:2643735/1‑68 (MQ=255)
ccatccatAACGGGGTGTAACTGAGCGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGa      >  1:3312065/1‑68 (MQ=255)
ccatccatAACGGGGTGTAACTGAGCGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGa      >  1:469849/1‑68 (MQ=255)
ccatccatAACGGGGTGTAACTGAGCGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGa      >  1:588917/1‑68 (MQ=255)
ccatccatAACGGGGTGTAACTGAGCGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGa      >  1:712226/1‑68 (MQ=255)
ccatccatAACGGGGTGTAACTGAGCGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGa      >  1:763011/1‑68 (MQ=255)
ccatccatAACGGGGTGTAACTGAGCGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGa      >  1:778536/1‑68 (MQ=255)
     catAACGGGGTGTAACTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCa  >  1:2879440/1‑67 (MQ=255)
                         |                                              
CCATCCATAACGGGGTGTAACTGAGTGGCCAGGGCATGAGTAAAATAACAGCGGCAACCAGCCCATGAATCA  >  minE/1939962‑1940033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: