| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,953,119 | G→A | 36.2% | G330G (GGC→GGT) | pepP ← | proline aminopeptidase P II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,953,119 | 0 | G | A | 36.2% | 99.7 / 87.1 | 144 | G330G (GGC→GGT) | pepP | proline aminopeptidase P II |
| Reads supporting (aligned to +/- strand): ref base G (52/39); new base A (30/22); total (82/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01 | |||||||||||
Only 100 of 144 total aligned reads displayed.
CCATGCATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTC > minE/1953054‑1953186 | ccATGCATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCg < 1:2741059/69‑1 (MQ=255)ccATGCATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCg < 1:743981/69‑1 (MQ=255)ccATGCATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCg < 1:1425469/69‑1 (MQ=255)ccATGCATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCg < 1:1224196/69‑1 (MQ=255)ccATGCATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCg < 1:3401201/69‑1 (MQ=255) tGCATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGt < 1:919845/69‑1 (MQ=255) tGCATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGt < 1:2490287/69‑1 (MQ=255) tGCATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGt < 1:2902680/69‑1 (MQ=255) tGCATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGt < 1:3038430/69‑1 (MQ=255) tGCATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGt < 1:794045/69‑1 (MQ=255) tGCATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGt < 1:1189214/69‑1 (MQ=255) tGCATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACACCACCTTTCAGGATGCCGAGt < 1:53224/69‑1 (MQ=255) cATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGttt > 1:15224/1‑69 (MQ=255) cATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGttt > 1:2041129/1‑69 (MQ=255) cATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGttt > 1:2417483/1‑69 (MQ=255) cATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGttt > 1:2645216/1‑69 (MQ=255) cATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGttt > 1:2848845/1‑69 (MQ=255) cATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGttt > 1:1610809/1‑69 (MQ=255) cATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGttt > 1:2938112/1‑69 (MQ=255) cATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGttt > 1:1204715/1‑69 (MQ=255) cATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGttt > 1:3133328/1‑69 (MQ=255) cATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGttt > 1:1276740/1‑69 (MQ=255) cATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGtt > 1:497004/1‑68 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:689720/69‑1 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:362279/69‑1 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:882284/69‑1 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:2691527/69‑1 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:427499/69‑1 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:1084717/69‑1 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:2179240/69‑1 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:2108121/69‑1 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:2048262/69‑1 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:1993231/69‑1 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:1897817/69‑1 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:187322/69‑1 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:1297032/69‑1 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:1237882/69‑1 (MQ=255) aaagaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:1165156/69‑1 (MQ=255) agaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTACCa > 1:1400470/1‑69 (MQ=255) agaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTACCa > 1:353272/1‑69 (MQ=255) agaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTACCa > 1:1414939/1‑69 (MQ=255) agaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTACCa > 1:3120681/1‑69 (MQ=255) agaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTACCa > 1:423608/1‑69 (MQ=255) agaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTACCa > 1:1264122/1‑69 (MQ=255) agaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTACCa > 1:1686050/1‑69 (MQ=255) agaaagGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTACCa > 1:841493/1‑69 (MQ=255) gACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATACCGAGTTTTAc < 1:1861778/61‑1 (MQ=255) cGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCATGATTCCGAGTTTTACCAGGCCGCTa < 1:2378254/69‑1 (MQ=255) cGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTa < 1:227313/69‑1 (MQ=255) cGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTa < 1:2341720/69‑1 (MQ=255) cGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTa < 1:491875/69‑1 (MQ=255) cGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTa < 1:503709/69‑1 (MQ=255) cGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTa < 1:2731206/69‑1 (MQ=255) cGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTa < 1:1030170/69‑1 (MQ=255) ggCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCat < 1:1173874/69‑1 (MQ=255) ggCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCat < 1:2631436/69‑1 (MQ=255) cTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCg < 1:2872097/40‑1 (MQ=255) cTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCatgatg > 1:2259304/1‑67 (MQ=255) cTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCatgatg > 1:1618185/1‑67 (MQ=255) cTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCatgatg > 1:2562771/1‑67 (MQ=255) cTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCatgatg > 1:2624830/1‑67 (MQ=255) cTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCatgatg > 1:2610515/1‑67 (MQ=255) cAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGGTGCGCACCACTTc > 1:2583594/1‑69 (MQ=255) cAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACtt > 1:66004/1‑68 (MQ=255) cAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTc > 1:2977285/1‑69 (MQ=255) cAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTc > 1:360692/1‑69 (MQ=255) cAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTc > 1:1668675/1‑69 (MQ=255) cAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTc > 1:1824645/1‑69 (MQ=255) ttCATCAACATCACCTTTCATGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCAc < 1:2441530/68‑1 (MQ=255) ttCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCAc < 1:473645/68‑1 (MQ=255) ttCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCAc < 1:2081098/68‑1 (MQ=255) ttCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCAc < 1:3114729/68‑1 (MQ=255) ttCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCAc < 1:1514677/68‑1 (MQ=255) tcatcaACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCa > 1:2766994/1‑69 (MQ=255) aTCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGt > 1:3302567/1‑63 (MQ=255) aTCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGt > 1:2157377/1‑63 (MQ=255) aTCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGt > 1:1102428/1‑63 (MQ=255) aTCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGt > 1:3193146/1‑63 (MQ=255) aTCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGt > 1:1292119/1‑63 (MQ=255) aTCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGt > 1:743248/1‑63 (MQ=255) aTCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGt > 1:3035992/1‑63 (MQ=255) aCCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAg > 1:3317443/1‑69 (MQ=255) aCCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAg > 1:2329864/1‑69 (MQ=255) aCCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAg > 1:2660414/1‑69 (MQ=255) aCCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAg > 1:602968/1‑69 (MQ=255) aCCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAg > 1:1485661/1‑69 (MQ=255) aCCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACAACTTCACCAGAGACTTCCAg > 1:487831/1‑69 (MQ=255) ccTTTCAGGATACCGAGTTTTACCAGACCGCTAACCATGATGCTCACCACTTCACCAGTGACTTcctg > 1:3093860/1‑66 (MQ=255) ccTTTCAGGATACCGAGTTTTACCAGACCGCTAACCATGATGCGCACCACTTCACCAGTGACTTcctg > 1:1241949/1‑66 (MQ=255) ccTTTCAGGATACCGAGTTTTACCAGACCGCTAACCATGATGCGCACCACTTCACCAGTGACTTcctg > 1:686200/1‑66 (MQ=255) ccTTTCAGGATACCGAGTTTTACCAGACCGCTAACCATGATGCGCACCACTTCACCAGTGACTTcctg > 1:147231/1‑66 (MQ=255) ccTTTCAGGATACCGAGTTTTACCAGACCGCTAACCATGATGCGCACCACTTCACCAGTGACTTcctg > 1:773602/1‑66 (MQ=255) ccTTTCAGGATACCGAGTTTTACCAGACCGCTAACCATGATGCGCACCACTTCACCAGTGACTTcctg > 1:1850551/1‑66 (MQ=255) ccTTTCAGGATACCGAGTTTTACCAGACCGCTAACCATGATGCGCACCACTTCACCAGTGACTTcctg > 1:823809/1‑66 (MQ=255) ccTTTCAGGATACCGAGTTTTACCAGACCGCTAACCATGATGCGCACCACTTCACCAGTGACTTcctg > 1:3097238/1‑66 (MQ=255) ccTTTCAGGATACCGAGTTTTACCAGACCGCTAACCATGATGCGCACCACTTCACCAGTGACTTcctg > 1:326217/1‑66 (MQ=255) ccTTTCAGGATACCGAGTTTTACCAGACCGCTAACCATGATGCGCACCACTTCACCAGTGACTTcctg > 1:3397371/1‑66 (MQ=255) ccTTTCAGGATACCGAGTTTTACCAGACCGCTAACCATGATGCGAACCACTTCACCAGTGACTTcctg > 1:476724/1‑66 (MQ=255) ccTTTCAGGATACCGAGTTTTACCAGACCGCTAACCATGATGAGCACCACTTCACCAGTGACTTcctg > 1:2958230/1‑66 (MQ=255) tGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTc > 1:92933/1‑69 (MQ=255) | CCATGCATAAAGAAAGGACGATGGGCGTTCTGAGCGATCAGTTCATCAACATCACCTTTCAGGATGCCGAGTTTTACCAGGCCGCTAACCATGATGCGCACCACTTCACCAGTGACTTCCAGAATGGAAGTTC > minE/1953054‑1953186 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |