Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,974,977 C→T 40.5% intergenic (+123/‑301) metK → / → galP methionine adenosyltransferase 1/D‑galactose transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,974,9770CT40.5% 27.7 / 42.6 64intergenic (+123/‑301)metK/galPmethionine adenosyltransferase 1/D‑galactose transporter
Reads supporting (aligned to +/- strand):  ref base C (27/11);  new base T (13/13);  total (40/24)
Fisher's exact test for biased strand distribution p-value = 1.17e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAGACAAAGATTTGTAATATT  >  minE/1974910‑1975043
                                                                   |                                                                  
aGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCa                                                                   <  1:2072529/69‑1 (MQ=255)
aGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCa                                                                   <  1:1379740/69‑1 (MQ=255)
      tCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAg                                                             <  1:2274980/69‑1 (MQ=255)
       cACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAg                                                             >  1:1349586/1‑68 (MQ=255)
       cACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAg                                                             >  1:2686639/1‑68 (MQ=255)
       cACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAg                                                             >  1:2549387/1‑68 (MQ=255)
       cACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAg                                                             <  1:2260621/68‑1 (MQ=255)
       cACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAg                                                             >  1:677313/1‑68 (MQ=255)
            cgcATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTatc                                                       <  1:1407572/69‑1 (MQ=255)
              taTCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTatc                                                       <  1:526658/66‑1 (MQ=255)
                  cGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTatc                                                       >  1:2332681/1‑63 (MQ=255)
                  cGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTatc                                                       >  1:466689/1‑63 (MQ=255)
                  cGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTatc                                                       <  1:3104281/63‑1 (MQ=255)
                  cGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTatc                                                       <  1:2245530/63‑1 (MQ=255)
                  cGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTatc                                                       <  1:3263625/63‑1 (MQ=255)
                  cGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTatc                                                       <  1:3401154/63‑1 (MQ=255)
                  cGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTatc                                                       <  1:2708563/63‑1 (MQ=255)
                         aaaaCCGCCCGCACAATAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGaaa                                          >  1:1983160/1‑69 (MQ=255)
                         aaaaCCGCCCGCACAATAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGaaa                                          >  1:1061845/1‑69 (MQ=255)
                         aaaaCCGCCCGCACAATAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGaaa                                          >  1:3112938/1‑69 (MQ=255)
                         aaaaCCGCCCGCACAATAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGaaa                                          >  1:1903750/1‑69 (MQ=255)
                         aaaaCCGCCCGCACAATAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGaaa                                          >  1:1664505/1‑69 (MQ=255)
                         aaaaCCGCCCGCACAATAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGaaa                                          >  1:2769901/1‑69 (MQ=255)
                         aaaaCCGCCCGCACAATAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGaaa                                          >  1:2393530/1‑69 (MQ=255)
                         aaaaCCGCCCGCACAATAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGaaa                                          >  1:2544919/1‑69 (MQ=255)
                         aaaaCCGCCCGCACAATAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGaaa                                          >  1:938324/1‑69 (MQ=255)
                         aaaaCCGCCCGCACAATAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGaa                                           >  1:101047/1‑68 (MQ=255)
                         aaaaCCGCCCGCACAATAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGaa                                           >  1:2626457/1‑68 (MQ=255)
                         aaaaCCGCCCGCACAATAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGaa                                           >  1:2895079/1‑68 (MQ=255)
                         aaaaCCGCCCGCACAATAACATCATTCTTCCTAAACACGTTTTACCGCAAATTATCATCACTACTGaaa                                          >  1:1789957/1‑69 (MQ=255)
                                        aTAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGAAATCGATTACaccaacc                           <  1:893935/69‑1 (MQ=255)
                                        aTAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGAAATCGATTACaccaacc                           <  1:1060156/69‑1 (MQ=255)
                                        aTAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGAAATCGATTACaccaacc                           <  1:678467/69‑1 (MQ=255)
                                        aTAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGAAATCGATTACaccaacc                           <  1:3222793/69‑1 (MQ=255)
                                        aTAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGAAATCGATTACaccaacc                           <  1:470576/69‑1 (MQ=255)
                                        aTAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGAAATCGATTACaccaacc                           <  1:24527/69‑1 (MQ=255)
                                        aTAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGAAATCGATTACaccaacc                           <  1:1607541/69‑1 (MQ=255)
                                        aTAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGAAATCGATTACaccaacc                           <  1:1810658/69‑1 (MQ=255)
                                        aTAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGAAATCGATTACaccaacc                           <  1:1472786/69‑1 (MQ=255)
                                        aTAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGAAATCGATTACaccaacc                           <  1:2159775/69‑1 (MQ=255)
                                        aTAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGAAATCGATTACaccaacc                           <  1:2614908/69‑1 (MQ=255)
                                        aTAACATCATTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGAAATCGATTACaccaacc                           <  1:2239265/69‑1 (MQ=255)
                                               catTCTTCCTCAACACGTTTTACCGCAAATTATCATCACTACTGAAATCGATTACaccaacc                           <  1:2110184/62‑1 (MQ=255)
                                                atTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGAt                                     >  1:3281987/1‑51 (MQ=255)
                                                atTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAg                    >  1:3432145/1‑68 (MQ=255)
                                                atTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAg                    >  1:2965475/1‑68 (MQ=255)
                                                atTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAg                    >  1:605419/1‑68 (MQ=255)
                                                atTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAg                    >  1:1843897/1‑68 (MQ=255)
                                                atTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAg                    >  1:2000441/1‑68 (MQ=255)
                                                atTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAg                    >  1:460813/1‑68 (MQ=255)
                                                atTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAg                    >  1:2270154/1‑68 (MQ=255)
                                                atTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAg                    >  1:3330079/1‑68 (MQ=255)
                                                atTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAg                    >  1:3291119/1‑68 (MQ=255)
                                                atTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAg                    >  1:2188825/1‑68 (MQ=255)
                                                atTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAg                    >  1:2204499/1‑68 (MQ=255)
                                                atTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAg                    >  1:856574/1‑68 (MQ=255)
                                                            cACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCCACCACAACAGACAAAGATTTGt        >  1:1437719/1‑68 (MQ=255)
                                                            cACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAGACAAAGATTTGt        >  1:96273/1‑68 (MQ=255)
                                                            cACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAGACAAAGATTTGt        >  1:951399/1‑68 (MQ=255)
                                                            cACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAGACAAAGATTTGt        >  1:484129/1‑68 (MQ=255)
                                                            cACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAGACAAAGATTTGt        >  1:445384/1‑68 (MQ=255)
                                                            cACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAGACAAAGATTTGt        >  1:3173152/1‑68 (MQ=255)
                                                            cACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAGACAAAGATTTGt        >  1:3025029/1‑68 (MQ=255)
                                                                  tCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAGACAAAGATTTGTAATAtt  >  1:748417/1‑68 (MQ=255)
                                                                   |                                                                  
AGGCGTTCACGCCGCATCCGGCAAAAAAACCGCCCGCACAATAACATCATTCTTCCTGATCACGTTTCACCGCAGATTATCATCACAACTGAAACCGATTACACCAACCACAACAGACAAAGATTTGTAATATT  >  minE/1974910‑1975043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: