Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,977,610 G→A 53.8% Q90Q (CAG→CAA endA → DNA‑specific endonuclease I

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,977,6100GA53.8% ‑0.3 / 30.5 39Q90Q (CAG→CAAendADNA‑specific endonuclease I
Reads supporting (aligned to +/- strand):  ref base G (6/12);  new base A (12/9);  total (18/21)
Fisher's exact test for biased strand distribution p-value = 2.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ATCAGGTGCGCAAAAATGAAAACCGCGCCAGCCGCGTAGAGTGGGAACATGTCGTTCCCGCCTGGCAGTTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAACTGCGCTAAAGATC  >  minE/1977543‑1977668
                                                                   |                                                          
aTCAGGTGCGCAAAAATGAAAACCGCGCCAGCCGCGTAGAGTGGGAACATGTCGTTCCCGCCTGGCAGt                                                           <  1:1912733/69‑1 (MQ=255)
aTCAGGTGCGCAAAAATGAAAACCGCGCCAGCCGCGTAGAGTGGGAACATGTCGTTCCCGCCTGGCAGt                                                           <  1:3318374/69‑1 (MQ=255)
              aaTGAAAACCGCGCCAGCCGCGTAGAGTGGGAACATGTCGTTCCCGCCTGGCAGTTCGGTCACCAgcgc                                             <  1:1679913/69‑1 (MQ=255)
              aaTGAAAACCGCGCCAGCCGCGTAGAGTGGGAACATGTCGTTCCCGCCTGGCAGTTCGGTCACCAgcgc                                             <  1:1932515/69‑1 (MQ=255)
                             aGCCGCGTAGAGTGGGAACATGTCGTTCCCGCCTGGCAGTTCGGTCACCAGCGCCAGTGCTGGCAGGAc                              <  1:94058/69‑1 (MQ=255)
                             aGCCGCGTAGAGTGGGAACATGTCGTTCCCGCCTGGCAGTTCGGGCACCAGCGCCAGTGCTGGCAGGAc                              <  1:649076/69‑1 (MQ=255)
                             aGCCGCGTAGAGTGGGAACATGTCGTTCCCGCCTGGCAGTGCGGTCACCAGCGCCAGTGCTGGCAGAAc                              <  1:1894131/69‑1 (MQ=255)
                              gCCGCGTAGAGTGGGAACATGTCGTTCCCGCCTGGCAGTTCGGTCACCAGCGCCAGTGCTGGCAGGAc                              <  1:1638988/68‑1 (MQ=255)
                              gCCGCGTAGAGTGGGAACATGTCGTTCCCGCCTGGCAGTTCGGTCACCAGCGCCAGTGCTGGCAGGAc                              <  1:463941/68‑1 (MQ=255)
                                                   tCGTTCCCGCCTGGCAGTTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAACTgcgc          >  1:798324/1‑67 (MQ=255)
                                                       tCCTGCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAg     <  1:1299929/68‑1 (MQ=255)
                                                       tCCTGCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAg     <  1:336609/68‑1 (MQ=255)
                                                       tCCTGCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAg     <  1:3052540/68‑1 (MQ=255)
                                                       tCCTGCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAg     <  1:2981921/68‑1 (MQ=255)
                                                       tCCTGCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAg     <  1:277629/68‑1 (MQ=255)
                                                       tCCTGCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAg     <  1:2190982/68‑1 (MQ=255)
                                                       tCCTGCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAg     <  1:1016460/68‑1 (MQ=255)
                                                       tCCTGCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAg     <  1:212477/68‑1 (MQ=255)
                                                       tCCTGCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAg     <  1:2253654/68‑1 (MQ=255)
                                                       tCCCGCCTGGCAGTTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAACTGCGCTAAAg     <  1:177081/68‑1 (MQ=255)
                                                       tCCCGCCTGGCAGTTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAACTGCGCTAAAg     <  1:2478304/68‑1 (MQ=255)
                                                       tCCCGCCTGGCAGTTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAACTGCGCTAAAg     <  1:3360546/68‑1 (MQ=255)
                                                        cctgCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAGa    >  1:2815313/4‑68 (MQ=255)
                                                        cctgCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAGAt   >  1:2287174/4‑69 (MQ=255)
                                                        cctgCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAGAt   >  1:1515058/4‑69 (MQ=255)
                                                        cctgCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAGAt   >  1:796518/4‑69 (MQ=255)
                                                        cctgCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAGAt   >  1:393844/4‑69 (MQ=255)
                                                        cctgCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAGAt   >  1:345329/4‑69 (MQ=255)
                                                        cctgCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAGAt   >  1:2535460/4‑69 (MQ=255)
                                                        cctgCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAGAt   >  1:3279709/4‑69 (MQ=255)
                                                        cctgCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAGAt   >  1:1347218/4‑69 (MQ=255)
                                                        cctgCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAGAt   >  1:2269356/4‑69 (MQ=255)
                                                        cctgCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAGAt   >  1:2275601/4‑69 (MQ=255)
                                                        cctgCCTGGCAATTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAATTGCGCCAAAGAt   >  1:234160/4‑69 (MQ=255)
                                                        cccGCCTTGCAGTTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAACTGCGCTAAAGAt   >  1:559369/1‑69 (MQ=255)
                                                        cccGCCTGGCAGTTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAACTGCGCTAAAGAt   >  1:2428011/1‑69 (MQ=255)
                                                        cccGCCTGGCAGTTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAACTGCGCTAAAGAt   >  1:3075075/1‑69 (MQ=255)
                                                        cccGCCTGGCAGTTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAACTGCGCTAAAGAt   >  1:2562089/1‑69 (MQ=255)
                                                        cccGCCTGGCAGTTCGGTCACCAGCGCCAGTGCTGGCAGGAGGTGGACGTAAAAACTGCGCTAAAGATc  >  1:56857/1‑69 (MQ=255)
                                                                   |                                                          
ATCAGGTGCGCAAAAATGAAAACCGCGCCAGCCGCGTAGAGTGGGAACATGTCGTTCCCGCCTGGCAGTTCGGTCACCAGCGCCAGTGCTGGCAGGACGGTGGACGTAAAAACTGCGCTAAAGATC  >  minE/1977543‑1977668

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: