Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 1,994,046 | C→T | 67.9% | V702M (GTG→ATG) | speC ← | ornithine decarboxylase, constitutive |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 1,994,046 | 0 | C | T | 67.9% | 68.8 / 42.3 | 84 | V702M (GTG→ATG) | speC | ornithine decarboxylase, constitutive |
Reads supporting (aligned to +/- strand): ref base C (2/25); new base T (29/28); total (31/53) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.87e-05 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAC > minE/1993992‑1994112 | aGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCgg > 1:2872712/1‑69 (MQ=255) aGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCgg > 1:1442802/1‑69 (MQ=255) ggTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGt < 1:639920/69‑1 (MQ=255) ttttttttATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCtata < 1:3075741/69‑1 (MQ=255) ttttttttATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCtata < 1:2029905/69‑1 (MQ=255) ttCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCtata < 1:719388/60‑1 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGtt > 1:2223205/1‑49 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCt > 1:2837934/1‑64 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:3106037/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:1927503/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:51479/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:350983/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:3328721/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:3279068/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:3273896/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:454333/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:3086194/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:2588836/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:2697444/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:2797634/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:2937456/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:794294/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:858761/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:1353805/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:1231394/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:1517977/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:1530388/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:860774/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:1546283/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:953812/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:1647980/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa > 1:567510/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCa > 1:362789/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCa > 1:2612703/1‑68 (MQ=255) ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGCTTTCGCTATAGACACCt > 1:2497121/1‑64 (MQ=255) caTAACCGTACAGCCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:1502062/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:96804/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:2999411/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:2991914/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:3032645/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:805153/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:802312/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:3218820/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:3284008/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:738238/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:1138057/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:722881/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:2105107/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:1523965/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:1560083/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:1737776/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:1483707/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:1435763/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:1836833/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:1844876/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:2907461/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:1997349/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:1211760/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:22417/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:2501502/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:2429636/45‑1 (MQ=255) caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:119816/45‑1 (MQ=255) tAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat < 1:2696226/43‑1 (MQ=255) aCCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGcaaca < 1:1098662/69‑1 (MQ=255) aCCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGcaaca < 1:1676993/69‑1 (MQ=255) aCCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGcaaca < 1:3426780/69‑1 (MQ=255) aCCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGcaaca < 1:2291319/69‑1 (MQ=255) aCCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGcaaca < 1:2216129/69‑1 (MQ=255) cGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACaaa < 1:2427322/69‑1 (MQ=255) cGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACaaa < 1:2696213/69‑1 (MQ=255) gTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACaaa < 1:279952/68‑1 (MQ=255) tttCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAGAATCCCGGCAACAAAtt < 1:707603/69‑1 (MQ=255) tttCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCATCAAAtt < 1:436456/69‑1 (MQ=255) tttCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAAtt < 1:1378781/69‑1 (MQ=255) tttCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAAtt < 1:628182/69‑1 (MQ=255) tttCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAAtt < 1:303568/69‑1 (MQ=255) aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCTGCAACAAATTCAc < 1:1947182/68‑1 (MQ=255) aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc < 1:657637/68‑1 (MQ=255) aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc < 1:65237/68‑1 (MQ=255) aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc < 1:1938008/68‑1 (MQ=255) aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc < 1:2174151/68‑1 (MQ=255) aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc < 1:889439/68‑1 (MQ=255) aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc < 1:3120392/68‑1 (MQ=255) aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc < 1:2890522/68‑1 (MQ=255) | AGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAC > minE/1993992‑1994112 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |