Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,994,046 C→T 67.9% V702M (GTG→ATG)  speC ← ornithine decarboxylase, constitutive

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,994,0460CT67.9% 68.8 / 42.3 84V702M (GTG→ATG) speCornithine decarboxylase, constitutive
Reads supporting (aligned to +/- strand):  ref base C (2/25);  new base T (29/28);  total (31/53)
Fisher's exact test for biased strand distribution p-value = 7.87e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

AGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAC  >  minE/1993992‑1994112
                                                      |                                                                  
aGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCgg                                                      >  1:2872712/1‑69 (MQ=255)
aGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCgg                                                      >  1:1442802/1‑69 (MQ=255)
 ggTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGt                                                     <  1:639920/69‑1 (MQ=255)
          ttttttttATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCtata                                            <  1:3075741/69‑1 (MQ=255)
          ttttttttATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCtata                                            <  1:2029905/69‑1 (MQ=255)
                   ttCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCtata                                            <  1:719388/60‑1 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGtt                                                    >  1:2223205/1‑49 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCt                                     >  1:2837934/1‑64 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:3106037/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:1927503/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:51479/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:350983/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:3328721/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:3279068/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:3273896/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:454333/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:3086194/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:2588836/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:2697444/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:2797634/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:2937456/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:794294/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:858761/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:1353805/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:1231394/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:1517977/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:1530388/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:860774/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:1546283/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:953812/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:1647980/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCaa                                >  1:567510/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCa                                 >  1:362789/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCTATAGACACCTTGCa                                 >  1:2612703/1‑68 (MQ=255)
                      ttACTTCAACACATAACCGTACAACCGTTTCATGCCATCCGCATCGCTTTCGCTATAGACACCt                                     >  1:2497121/1‑64 (MQ=255)
                                 caTAACCGTACAGCCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:1502062/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:96804/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:2999411/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:2991914/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:3032645/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:805153/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:802312/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:3218820/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:3284008/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:738238/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:1138057/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:722881/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:2105107/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:1523965/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:1560083/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:1737776/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:1483707/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:1435763/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:1836833/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:1844876/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:2907461/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:1997349/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:1211760/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:22417/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:2501502/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:2429636/45‑1 (MQ=255)
                                 caTAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:119816/45‑1 (MQ=255)
                                   tAACCGTACAACCGTTTCATGCCATCCGCATCGGTTTCGCtat                                             <  1:2696226/43‑1 (MQ=255)
                                             aCCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGcaaca         <  1:1098662/69‑1 (MQ=255)
                                             aCCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGcaaca         <  1:1676993/69‑1 (MQ=255)
                                             aCCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGcaaca         <  1:3426780/69‑1 (MQ=255)
                                             aCCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGcaaca         <  1:2291319/69‑1 (MQ=255)
                                             aCCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGcaaca         <  1:2216129/69‑1 (MQ=255)
                                               cGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACaaa       <  1:2427322/69‑1 (MQ=255)
                                               cGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACaaa       <  1:2696213/69‑1 (MQ=255)
                                                gTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACaaa       <  1:279952/68‑1 (MQ=255)
                                                 tttCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAGAATCCCGGCAACAAAtt     <  1:707603/69‑1 (MQ=255)
                                                 tttCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCATCAAAtt     <  1:436456/69‑1 (MQ=255)
                                                 tttCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAAtt     <  1:1378781/69‑1 (MQ=255)
                                                 tttCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAAtt     <  1:628182/69‑1 (MQ=255)
                                                 tttCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAAtt     <  1:303568/69‑1 (MQ=255)
                                                     aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCTGCAACAAATTCAc  <  1:1947182/68‑1 (MQ=255)
                                                     aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc  <  1:657637/68‑1 (MQ=255)
                                                     aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc  <  1:65237/68‑1 (MQ=255)
                                                     aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc  <  1:1938008/68‑1 (MQ=255)
                                                     aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc  <  1:2174151/68‑1 (MQ=255)
                                                     aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc  <  1:889439/68‑1 (MQ=255)
                                                     aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc  <  1:3120392/68‑1 (MQ=255)
                                                     aCGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAc  <  1:2890522/68‑1 (MQ=255)
                                                      |                                                                  
AGGTGACCCGTTTTTTTTATTCTTACTTCAACACATAACCGTACAACCGTTTCACGCCATCCGCATCGGTTTCGCTATAAACACCTTGCAGCTCCGGCGAAAATCCCGGCAACAAATTCAC  >  minE/1993992‑1994112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: