| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,995,808 | G→A | 53.5% | G114G (GGC→GGT) | speC ← | ornithine decarboxylase, constitutive |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,995,808 | 0 | G | A | 53.5% | 8.1 / 87.8 | 101 | G114G (GGC→GGT) | speC | ornithine decarboxylase, constitutive |
| Reads supporting (aligned to +/- strand): ref base G (9/38); new base A (18/36); total (27/74) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.00e-01 | |||||||||||
Only 100 of 103 total aligned reads displayed.
GCGTCCGGCAGGATGCTTTTTAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCAAATTCTCTTCATACTGACAGGC > minE/1995742‑1995876 | gCGTCCGGCAGGATGCTTTTTAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGcc < 1:2644814/69‑1 (MQ=255)gCGTCCGGCAGGATGCTTTTTAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGcc < 1:2175853/69‑1 (MQ=255) cAGGATGCTTTTTAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGCCCATCTCaa < 1:644308/69‑1 (MQ=255) cAGGATGCTTTTTAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGCCCATCTCaa < 1:637334/69‑1 (MQ=255) cAGGATGCTTTTTAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGCCCATCTCaa < 1:3318202/69‑1 (MQ=255) cAGGATGCTTTTTAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGCCCATCTCaa < 1:1311956/69‑1 (MQ=255) gATGCTTTTTAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGCCCATCTCAACGt < 1:2219546/69‑1 (MQ=255) tttAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGcc < 1:2669572/51‑1 (MQ=255) tttAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGcc < 1:2847764/51‑1 (MQ=255) tttAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGcc < 1:1794686/51‑1 (MQ=255) tttAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGcc < 1:3338402/51‑1 (MQ=255) tttAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGcc < 1:2974411/51‑1 (MQ=255) tttAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGcc < 1:364657/51‑1 (MQ=255) tttAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGcc < 1:3395734/51‑1 (MQ=255) ttAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGcc < 1:1196696/50‑1 (MQ=255) aaaCGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCgt > 1:2972257/1‑69 (MQ=255) aaaCGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCgt > 1:445178/1‑69 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:2324474/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:2528927/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:2463143/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:3142337/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:2239104/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:2219173/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:2068277/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:1995978/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:2756169/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:3011873/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:2587806/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:424555/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:567500/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:612341/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:616694/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:6589/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:766652/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:837590/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:944735/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:1933722/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:1168679/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:1175525/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:1361089/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:1430307/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:1485548/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:1512135/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:1521162/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:161316/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:1707098/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:1714244/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:1806324/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:1732454/60‑1 (MQ=255) aTGTTGATGTCCAGGGCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCgt < 1:195753/60‑1 (MQ=255) tGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAAc < 1:430053/69‑1 (MQ=255) tGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAAc < 1:889356/69‑1 (MQ=255) gATGTCCAGGGCAAGCAAAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGt < 1:1153806/68‑1 (MQ=255) gATGTCCAGGGCAAGCAAAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGt < 1:2408204/68‑1 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATaaa > 1:2697118/1‑55 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:666285/1‑69 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:568574/1‑69 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:1719834/1‑69 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:1200368/1‑69 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:418856/1‑69 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:1220551/1‑69 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:3382403/1‑69 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:1829115/1‑69 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:318565/1‑69 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:2612217/1‑69 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:2332262/1‑69 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:1786858/1‑69 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:2719350/1‑69 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:2771797/1‑69 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaa > 1:105994/1‑68 (MQ=255) gggCAAGCAAAGGTGCTATTACCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGAGGCAGCaa > 1:519424/1‑68 (MQ=255) gggCAAGCAAAGGTGCTATTACACATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:116784/1‑69 (MQ=255) gcaagcaaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCAAAtt > 1:1151320/1‑69 (MQ=255) caaAGGTTCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAACCGGTGGCAGCaaa < 1:829813/62‑1 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACgg > 1:3384638/1‑52 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACg > 1:1072964/1‑51 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa < 1:41608/62‑1 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa < 1:1697552/62‑1 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa < 1:1555168/62‑1 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:810976/1‑62 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa < 1:1095648/62‑1 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa < 1:2317359/62‑1 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:3130467/1‑62 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa < 1:1179816/62‑1 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa < 1:186492/62‑1 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa < 1:630432/62‑1 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa < 1:883367/62‑1 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa < 1:646722/62‑1 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa > 1:665850/1‑62 (MQ=255) caaAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCAAATTCTCtt > 1:2460238/1‑69 (MQ=255) aaaGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCaaa < 1:217624/61‑1 (MQ=255) cTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCAAATTCTCTTCATACTGa < 1:1187795/69‑1 (MQ=255) cTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCAAATTCTCTTCATACTGa < 1:548013/69‑1 (MQ=255) cTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCAAATTCTCTTCATACTGa < 1:1189532/69‑1 (MQ=255) cTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCAAATTCTCTTCATACTGa < 1:1348474/69‑1 (MQ=255) cTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCAAATTCTCTTCATACTGa < 1:3259943/69‑1 (MQ=255) cTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCAAATTCTCTTCATACTGa < 1:3038312/69‑1 (MQ=255) cTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCAAATTCTCTTCATACTGa < 1:3054554/69‑1 (MQ=255) gCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCAAATTCTCTTCATACTGACAgg > 1:374300/1‑68 (MQ=255) gCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCAAATTCTCTTCATACTGACAGGc > 1:1698962/1‑69 (MQ=255) | GCGTCCGGCAGGATGCTTTTTAAAAAACGCACCATGTTGATGTCCAGGGCAAGCAAAGGTGCTGTTGCCCATCTCAACGTACTGCGTCAGCGTGTCATAAAACGGTGGCAGCAAATTCTCTTCATACTGACAGGC > minE/1995742‑1995876 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |