| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,044,284 | C→T | 42.0% | R236R (CGC→CGT) | yqiK → | conserved hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,044,284 | 0 | C | T | 42.0% | 19.1 / 38.5 | 57 | R236R (CGC→CGT) | yqiK | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (10/23); new base T (13/11); total (23/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGTTTAT > minE/2044229‑2044331 | gcgAACGTAACGAAGTTGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTcgc < 1:1022997/69‑1 (MQ=255)gcgAACGTAACGAAGTTGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTcgc < 1:3221523/69‑1 (MQ=255)gcgAACGTAACGAAGTTGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTcgc < 1:3023459/69‑1 (MQ=255)gcgAACGTAACGAAGTTGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTcgc < 1:3002907/69‑1 (MQ=255)gcgAACGTAACGAAGTTGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTcgc < 1:2469348/69‑1 (MQ=255)gcgAACGTAACGAAGTTGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTcgc < 1:2374282/69‑1 (MQ=255)gcgAACGTAACGAAGTTGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTcgc < 1:225590/69‑1 (MQ=255)gcgAACGTAACGAAGTTGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTcgc < 1:873387/69‑1 (MQ=255)gcgAACGTAACGAAGTTGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTcgc < 1:1478995/69‑1 (MQ=255)gcgAACGTAACGAAGTTGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTcgc < 1:1755652/69‑1 (MQ=255)gcgAACGTAACGAAGTTGAACAGGATGTGGAAGCCGCAGTGCGTGAGAAAAACCGTGATGCACTTTcgc < 1:186851/69‑1 (MQ=255) ttGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTCGCTCAAGTTGGAGATTg > 1:235295/1‑69 (MQ=255) ttGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTCGCGCAAGTTGGAGATTg > 1:961334/1‑69 (MQ=255) ttGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTCGCGCAAGTTGGAGATTg > 1:345994/1‑69 (MQ=255) ttGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTCGCGCAAGTTGGAGATTg > 1:303857/1‑69 (MQ=255) ttGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTCGCGCAAGTTGGAGATTg > 1:103551/1‑69 (MQ=255) ttGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTCGCGCAAGTTGGAGATTg > 1:2956381/1‑69 (MQ=255) ttGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTCGCGCAAGTTGGAGATTg > 1:959056/1‑69 (MQ=255) ttGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTCGCGCAAGTTGGAGATTg > 1:2872005/1‑69 (MQ=255) ttGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTCGCGCAAGTTGGAGATTg > 1:2753194/1‑69 (MQ=255) ttGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTCGCGCAAGTTGGAGATTg > 1:2676581/1‑69 (MQ=255) ttGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTCGCGCAAGTTGGAGATTg > 1:2656473/1‑69 (MQ=255) ttGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTCGCGCAAGTTGGAGATTg > 1:2654327/1‑69 (MQ=255) ttGAACAGGATGTGGAAGTCGCAGTGCGTGAGAAAAACCGTGATGCACTTTCGCGCAAGTTGGAGATTg > 1:2635116/1‑69 (MQ=255) gAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTg > 1:2585797/1‑67 (MQ=255) gAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTg > 1:533079/1‑67 (MQ=255) gAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTg > 1:1247106/1‑67 (MQ=255) gAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTg > 1:1939834/1‑67 (MQ=255) gAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTg > 1:928756/1‑67 (MQ=255) gAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTg > 1:2105802/1‑67 (MQ=255) aGGATGTAGAAGTTGCGGTGCGTGAAAAAAATcgc < 1:1452943/35‑1 (MQ=255) gAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCg < 1:1296782/69‑1 (MQ=255) gAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCg > 1:1807895/1‑69 (MQ=255) gAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCg < 1:3328560/69‑1 (MQ=255) gAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCg < 1:3283288/69‑1 (MQ=255) gAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCg < 1:1033423/69‑1 (MQ=255) gAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCg > 1:3049367/1‑69 (MQ=255) gAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCg < 1:1844711/69‑1 (MQ=255) gAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCg < 1:140464/69‑1 (MQ=255) gAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCg > 1:132695/1‑69 (MQ=255) gAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCg > 1:1656290/1‑69 (MQ=255) aaGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCg < 1:3392373/68‑1 (MQ=255) aGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:1005451/69‑1 (MQ=255) aGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:988800/69‑1 (MQ=255) aGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:611847/69‑1 (MQ=255) aGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:590272/69‑1 (MQ=255) aGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:601409/69‑1 (MQ=255) aGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:983665/69‑1 (MQ=255) aGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:417904/69‑1 (MQ=255) aGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:2479879/69‑1 (MQ=255) aGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:246174/69‑1 (MQ=255) aGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:2413794/69‑1 (MQ=255) aGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:2242178/69‑1 (MQ=255) aGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:2159315/69‑1 (MQ=255) aGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:1773124/69‑1 (MQ=255) aGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:160048/69‑1 (MQ=255) gTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGtt < 1:1505975/68‑1 (MQ=255) gCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGTTTAt < 1:2230436/68‑1 (MQ=255) | GCGAACGTAACGAAGTTGAACAGGATGTAGAAGTTGCGGTGCGTGAAAAAAATCGCGATGCGCTATCGCGCAAGCTGGAGATTGAACAGCAAGAAGCGTTTAT > minE/2044229‑2044331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |