| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,052,180 | T→G | 44.2% | T87T (ACT→ACG) | htrG → | predicted signal transduction protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,052,180 | 0 | T | G | 44.2% | 10.7 / 82.1 | 77 | T87T (ACT→ACG) | htrG | predicted signal transduction protein |
| Reads supporting (aligned to +/- strand): ref base T (19/24); new base G (15/19); total (34/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATGCCCAGGTGAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCAAAACCCTGACCGATAAACT > minE/2052119‑2052245 | aTGCCCAGGTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCaa > 1:2796511/1‑69 (MQ=255)aTGCCCAGGTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCaa > 1:214097/1‑69 (MQ=255)aTGCCCAGGTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCaa > 1:2296014/1‑69 (MQ=255)aTGCCCAGGTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCaa > 1:2379154/1‑69 (MQ=255)aTGCCCAGGTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCaa > 1:2430626/1‑69 (MQ=255)aTGCCCAGGTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCaa > 1:199249/1‑69 (MQ=255)aTGCCCAGGTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCaa > 1:195297/1‑69 (MQ=255)aTGCCCAGGTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCaa > 1:2983884/1‑69 (MQ=255)aTGCCCAGGTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCaa > 1:3324627/1‑69 (MQ=255)aTGCCCAGGTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCaa > 1:1604329/1‑69 (MQ=255)aTGCCCAGGTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCaa > 1:1038261/1‑69 (MQ=255)aTGCCCAGGTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCaa > 1:975038/1‑69 (MQ=255)aTGCCCAGGTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCaa > 1:496457/1‑69 (MQ=255)aTGCCCAGGTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCa > 1:1968061/1‑68 (MQ=255)aTGCCCAGCTGAAAGACAGCTCTGGTCGTACTGCCTGGATCCCGTTGAAACAACTTAGCACGGAGCCaa > 1:730661/1‑69 (MQ=255) gCCCAGGTGAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAg < 1:1901265/68‑1 (MQ=255) gCCCAGGTGAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAg < 1:1950873/68‑1 (MQ=255) gCCCAGGTGAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAg < 1:256757/68‑1 (MQ=255) gCCCAGGTGAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAg < 1:1557276/68‑1 (MQ=255) gCCCAGGTGAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAg < 1:779281/68‑1 (MQ=255) gCCCAGGTGAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAg < 1:3221598/68‑1 (MQ=255) gCCCAGGTGAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAg < 1:2914868/68‑1 (MQ=255) cccAGGTGAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAg < 1:2536780/67‑1 (MQ=255) cccAGGTGAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAg < 1:2313721/67‑1 (MQ=255) cccAGGTGAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAg < 1:1161803/67‑1 (MQ=255) cccAGGTGAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAg < 1:2277294/67‑1 (MQ=255) gAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTc > 1:1854520/1‑69 (MQ=255) gAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTc > 1:552795/1‑69 (MQ=255) gAAAGACAGCTCTGGCCGTACCG‑CTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTcc > 1:994272/1‑69 (MQ=255) aaaGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAg < 1:2008367/59‑1 (MQ=255) gACAGCTCTGGCCGTACCGCCTGGATCCCTTTGAAACAACTTAGCACTGAGCCAAg < 1:721240/56‑1 (MQ=255) gACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCgt > 1:2093513/1‑69 (MQ=255) gACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCgt > 1:176999/1‑69 (MQ=255) gACAGCTCTGGCCGTACCGCCTGGATCCCGGTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCgt > 1:474715/1‑69 (MQ=255) aCAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCgtg > 1:2047982/1‑69 (MQ=255) aCAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCgt > 1:921722/1‑68 (MQ=255) tctGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCgtgt > 1:401198/1‑65 (MQ=255) tctGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCgtgt > 1:1751437/1‑65 (MQ=255) gTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTg > 1:837957/1‑68 (MQ=255) aCCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGaa < 1:2466156/69‑1 (MQ=255) aCCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGaa < 1:1358895/69‑1 (MQ=255) aCCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGaa < 1:422412/69‑1 (MQ=255) cccGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCaa > 1:387603/1‑69 (MQ=255) cccGTTGAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGATCTGGAAAATCAGGTCaa < 1:2908005/69‑1 (MQ=255) cccGTTGAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGATCTGGAAAATCAGGTCaa < 1:2206296/69‑1 (MQ=255) cccGTTGAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGATCTGGAAAATCAGGTCaa < 1:610702/69‑1 (MQ=255) cccGTTGAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGATCTGGAAAATCAGGTCaa < 1:177103/69‑1 (MQ=255) cccGTTGAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGATCTGGAAAATCAGGTCaa < 1:2856554/69‑1 (MQ=255) cccGTTGAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGATCTGGAAAATCAGGTCaa < 1:1290993/69‑1 (MQ=255) gTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCaaaa < 1:578531/68‑1 (MQ=255) gTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCaaaa < 1:1156252/68‑1 (MQ=255) gTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCaaa > 1:1545274/1‑67 (MQ=255) gTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCAAAAc > 1:51066/1‑69 (MQ=255) gTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCAAAAc > 1:3369797/1‑69 (MQ=255) gTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCAAAAc > 1:889198/1‑69 (MQ=255) gTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCAAAAc > 1:3346484/1‑69 (MQ=255) gTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCAAAAc > 1:2760166/1‑69 (MQ=255) gTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCAAAAc > 1:1838190/1‑69 (MQ=255) gAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGa < 1:3062858/45‑1 (MQ=255) gAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGa < 1:992142/45‑1 (MQ=255) gAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGa < 1:1166628/45‑1 (MQ=255) gAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGa < 1:2410528/45‑1 (MQ=255) gAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGa < 1:1963080/45‑1 (MQ=255) gAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGa < 1:649651/45‑1 (MQ=255) gAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGa < 1:358589/45‑1 (MQ=255) gAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGa < 1:3271823/45‑1 (MQ=255) gAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGa < 1:546675/45‑1 (MQ=255) gAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGa < 1:1608085/45‑1 (MQ=255) gAAACAACTTAGCACGGAGCCAAGCCTGCGTTCCCGTGTGCCAGa < 1:3314006/45‑1 (MQ=255) gAAACAACTTAGCACGGAACCAAGCCTGCGTTCCCGTGTGCCAGa < 1:3139735/45‑1 (MQ=255) gAAACAACTTAGCACGCAGCCAAGCCTGCGTTCCCGTGTGCCAGa < 1:1727733/45‑1 (MQ=255) aCTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCAAAACCCTGACCGATaaa < 1:445900/66‑1 (MQ=255) aCTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCAAAACCCTGACCGATAAACt < 1:3286648/68‑1 (MQ=255) aCTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCAAAACCCTGACCGATAAACt < 1:1993609/68‑1 (MQ=255) aCTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCAAAACCCTGACCGATAAACt < 1:472195/68‑1 (MQ=255) aCTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCAAAACCCTGACCGATAAACt < 1:209767/68‑1 (MQ=255) aCTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCAAAACCCTGACCGATAAACt < 1:2118096/68‑1 (MQ=255) | ATGCCCAGGTGAAAGACAGCTCTGGCCGTACCGCCTGGATCCCGTTGAAACAACTTAGCACTGAGCCAAGCCTGCGCTCCCGTGTGCCAGATCTGGAAAATCAGGTCAAAACCCTGACCGATAAACT > minE/2052119‑2052245 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |