| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,053,407 | G→A | 52.1% | P268P (CCG→CCA) | cca → | fused tRNA nucleotidyl transferase and 2'3'‑cyclic phosphodiesterase/2'nucleotidase/phosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,053,407 | 0 | G | A | 52.1% | 0.1 / 62.1 | 71 | P268P (CCG→CCA) | cca | fused tRNA nucleotidyl transferase and 2'3'‑cyclic phosphodiesterase/2'nucleotidase/phosphatase |
| Reads supporting (aligned to +/- strand): ref base G (18/16); new base A (17/20); total (35/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.38e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.10e-01 | |||||||||||
TCGATGTCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGTCATCATGGTCATGGCCCGGCGGGTGTTAAGTTAGTGGAACAACTATGCCAGC > minE/2053340‑2053462 | tCGATGTCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCcgc < 1:151279/69‑1 (MQ=255) tGTCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGtc < 1:232610/68‑1 (MQ=255) tGTCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGtc < 1:2287795/68‑1 (MQ=255) tGTCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGtc < 1:1348057/68‑1 (MQ=255) tGTCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGtc < 1:464950/68‑1 (MQ=255) tGTCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGtc < 1:725648/68‑1 (MQ=255) tCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGtcatc < 1:3257565/69‑1 (MQ=255) tCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGtcatc < 1:3178340/69‑1 (MQ=255) tCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGtcatc > 1:1960090/1‑69 (MQ=255) tCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGtcatc < 1:2203032/69‑1 (MQ=255) tCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGtcatc > 1:1539891/1‑69 (MQ=255) tCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGtcatc > 1:778673/1‑69 (MQ=255) tCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGtcatc < 1:1178357/69‑1 (MQ=255) ccGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGtcatc < 1:1478942/68‑1 (MQ=255) cGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGtcatca < 1:3047859/68‑1 (MQ=255) tCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGTCAtcatggtc > 1:2737251/1‑69 (MQ=255) tCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGTCAtcatggtc > 1:2616315/1‑69 (MQ=255) tCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGTCAtcatggtc > 1:2801904/1‑69 (MQ=255) tCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGTCAtcatggtc > 1:2266793/1‑69 (MQ=255) tCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGTCAtcatggtc > 1:1032969/1‑69 (MQ=255) tCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGTCAtcatggtc > 1:1964394/1‑69 (MQ=255) tCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGTCAtcatggtc > 1:794124/1‑69 (MQ=255) tCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGTCAtcatggt < 1:2050657/68‑1 (MQ=255) ttATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGTCATCATGGTCATGGCCcg > 1:3294204/1‑69 (MQ=255) gATCTCTGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:441068/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGtcat > 1:1349049/1‑45 (MQ=37) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:3056728/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:601998/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:753797/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:925286/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:2440356/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:2436517/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:942928/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:2329782/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:210378/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:211063/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:2247627/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:1745103/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:2302922/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:2325875/1‑67 (MQ=255) gATCTCGGTAAAGGACTGACGCCGCCAGAAATTTGGCCACGTCATCATGGTCATGGCCCGGCGGgtg > 1:2635322/1‑67 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGTCGGGTGTGAAGTTAg < 1:811403/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:702239/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:1504074/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:180411/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:1334773/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:182081/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:1980920/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:904269/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:1615137/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:1290842/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:2953406/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:2839180/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:2118679/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:2530560/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:237321/68‑1 (MQ=255) tAAAGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGGGTGAAGTTAg < 1:2977978/68‑1 (MQ=255) aaaGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:2529298/67‑1 (MQ=255) aaaGGACTGACGCCGCCAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:2399757/67‑1 (MQ=255) tGACGCCGCCAGAACTCTGGCCGCGTCAtcatggt < 1:2445201/35‑1 (MQ=255) tGACGCCGCCAGAACTCTGGCCGCGTCATCATGGTCATGGCCCGGCGGGTGTTAAGTTAGTGGaacaac < 1:1761707/69‑1 (MQ=255) gccgccAGAACTTTGGCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:2037406/56‑1 (MQ=38) gccgccAGAACTCTGGCCGCGTCATCATGGTCATGGCCCGGCGGgtg > 1:922687/1‑47 (MQ=255) gccgccAGAACTCTGGCCGCGTCATCATGGTCATGGCCCGGCGGgtg > 1:898440/1‑47 (MQ=255) gccgccAGAACTCTGGCCGCGTCATCATGGTCATGGCCCGGCGGgtg > 1:1016192/1‑47 (MQ=255) gccgccAGAACTCTGGCCGCGTCATCATGGTCATGGCCCGGCGGgtg > 1:715245/1‑47 (MQ=255) gccgccAGAACTCTGGCCGCGTCATCATGGTCATGGCCCGGCGGgtg > 1:3255664/1‑47 (MQ=255) gccgccAGAACTCTGGCCGCGTCATCATGGTCATGGCCCGGCGGgtg > 1:3204799/1‑47 (MQ=255) gccgccAGAACTCTGGCCGCGTCATCATGGTCATGGCCCGGCGGgtg > 1:2056496/1‑47 (MQ=255) cAGAACTCTGGCCGCGTCATCATGGTCATGGCCCGGCGGGTGTTAAGTTAGTGGAACAACTATGCCAGc < 1:345814/69‑1 (MQ=255) cAGAACTCTGGCCGCGTCATCATGGTCATGGCCCGGCGGGTGTTAAGTTAGTGGAACAACTATGCCAGc < 1:2603323/69‑1 (MQ=255) ggCCACGTCATCATGGTCATGGCCCGGCGGGTGTGAAGTTAg < 1:1678414/42‑1 (MQ=37) | TCGATGTCCGTTTCGCAACTTTATGCCACGATCTCGGTAAAGGGCTGACGCCGCCAGAACTCTGGCCGCGTCATCATGGTCATGGCCCGGCGGGTGTTAAGTTAGTGGAACAACTATGCCAGC > minE/2053340‑2053462 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |