| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,070,061 | A→G | 38.6% | intergenic (‑272/‑119) | aer ← / → ygjG | fused signal transducer for aerotaxis sensory component and methyl accepting chemotaxis component/putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,070,061 | 0 | A | G | 38.6% | 57.6 / 81.4 | 119 | intergenic (‑272/‑119) | aer/ygjG | fused signal transducer for aerotaxis sensory component and methyl accepting chemotaxis component/putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent |
| Reads supporting (aligned to +/- strand): ref base A (42/31); new base G (21/25); total (63/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.58e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.67e-01 | |||||||||||
Only 100 of 120 total aligned reads displayed.
AACGTGCATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGA > minE/2070001‑2070123 | aaCGTGCATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGtt < 1:930250/69‑1 (MQ=255)aaCGTGCATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGtt < 1:594081/69‑1 (MQ=255)aaCGTGCATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGtt < 1:486511/69‑1 (MQ=255)aaCGTGCATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGtt < 1:3429686/69‑1 (MQ=255)aaCGTGCATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGtt < 1:198349/69‑1 (MQ=255)aaCGTGCATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGtt < 1:3339883/69‑1 (MQ=255)aaCGTGCATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGtt < 1:2154987/69‑1 (MQ=255)aaCGTGCATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGtt < 1:1359453/69‑1 (MQ=255)aaCGTGCATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGtt < 1:3054298/69‑1 (MQ=255)aaCGTGCATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGtt < 1:293407/69‑1 (MQ=255)aaCGTGCATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGtt < 1:26238/69‑1 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:1853038/1‑67 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:1046651/1‑67 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:1887965/1‑67 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:2439189/1‑67 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:2459646/1‑67 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:2626333/1‑67 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:3273477/1‑67 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:328131/1‑67 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:334951/1‑67 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:3379202/1‑67 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:933862/1‑67 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:1634550/1‑67 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:1261015/1‑67 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:1304507/1‑67 (MQ=255) cATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACa > 1:157563/1‑67 (MQ=255) tGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGc > 1:3414828/1‑69 (MQ=255) tGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGc > 1:1803614/1‑69 (MQ=255) tGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGc > 1:2112052/1‑69 (MQ=255) cagcaATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTa < 1:1528062/69‑1 (MQ=255) gcaATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTaaa < 1:3131411/69‑1 (MQ=255) gcaATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTaaa < 1:2998807/69‑1 (MQ=255) tCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAAt < 1:806804/69‑1 (MQ=255) tCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAAt < 1:1392963/69‑1 (MQ=255) cATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATg > 1:3209121/1‑68 (MQ=255) cATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATg > 1:3197843/1‑68 (MQ=255) cATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATg > 1:2741026/1‑68 (MQ=255) cATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATg > 1:1769487/1‑68 (MQ=255) cATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATg > 1:2588151/1‑68 (MQ=255) cATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATg > 1:1018689/1‑68 (MQ=255) cATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATg > 1:1118800/1‑68 (MQ=255) tACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGAt < 1:1132026/68‑1 (MQ=255) tACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGAt < 1:3115004/68‑1 (MQ=255) tACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGAt < 1:393717/68‑1 (MQ=255) tACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGAt < 1:59250/68‑1 (MQ=255) tACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATa < 1:836775/69‑1 (MQ=255) tACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATa < 1:3267817/69‑1 (MQ=255) tACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATa < 1:54872/69‑1 (MQ=255) cccGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATaa > 1:416602/1‑68 (MQ=255) cccGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATaa > 1:2967628/1‑68 (MQ=255) cccGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATaa > 1:2944721/1‑68 (MQ=255) cccGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATaa > 1:814663/1‑68 (MQ=255) cccGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATaa > 1:2221089/1‑68 (MQ=255) cccGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATaa > 1:1173887/1‑68 (MQ=255) cccGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATaa > 1:2551048/1‑68 (MQ=255) cccGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATaa > 1:2224997/1‑68 (MQ=255) cccGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATa > 1:737031/1‑67 (MQ=255) aaaaaCCGTGCAAAATAACAACAAATGTTAACTGATAGCATTaaa < 1:2991832/45‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:781319/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:3265028/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:826156/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:3402816/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:47514/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:1086833/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:1682191/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:1519008/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:1693450/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:1632603/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:1628737/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:1888012/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:2141354/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:1562140/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:2316557/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:2356503/66‑1 (MQ=255) cAAAATAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:1481463/66‑1 (MQ=255) aaaaTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGttt < 1:3318837/65‑1 (MQ=255) aaaacagcAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:2623487/3‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATccc > 1:1389271/1‑67 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCg > 1:2483077/1‑68 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:2977403/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:328332/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:3152735/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:835165/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:2867573/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:195919/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:2002694/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:698645/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:11175/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:2687268/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:2308871/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:1338413/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:2429916/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:1385413/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:253330/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:2554452/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:1215365/1‑69 (MQ=255) aTAACAGCAAATGTTAGCAAATAGCATTAAATATTGCGCAAATGATAACCACATTTGTGTTTATCCCGa > 1:3329117/1‑69 (MQ=255) aTAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGAt < 1:2188078/46‑1 (MQ=255) aTAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGAt < 1:2861802/46‑1 (MQ=255) aTAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGAt < 1:2081250/46‑1 (MQ=255) | AACGTGCATTTGCGCAGCAATCATCAAATCCATACCCGACAAAAACCGTGCAAAATAACAACAAATGTTAACAGATAGCATTAAATATTGCACAAATGATAACCGAATTTGTGTTTATCCCGA > minE/2070001‑2070123 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |