| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,082,252 | C→T | 48.9% | G133G (GGC→GGT) | exuR → | DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,082,252 | 0 | C | T | 48.9% | 1.5 / 86.7 | 96 | G133G (GGC→GGT) | exuR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base C (27/22); new base T (21/26); total (48/48) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.41e-01 | |||||||||||
Only 100 of 137 total aligned reads displayed.
GCAACTCAGGTAACGAAACAGGACATCATGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCACATTCAGGTCGCTCTGGCGACGCAGAA > minE/2082190‑2082320 | gCAACTCAGGTAACGAAACAGGACATCATGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACaa < 1:1056754/69‑1 (MQ=255) ggACATCATGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAAc < 1:2984865/47‑1 (MQ=255) gACATCATGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTgg < 1:1596046/69‑1 (MQ=255) gACATCATGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTgg < 1:2830627/69‑1 (MQ=255) gACATCATGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTgg < 1:419140/69‑1 (MQ=255) gACATCATGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTgg < 1:1129305/69‑1 (MQ=255) aCATCATGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTggg < 1:2163157/69‑1 (MQ=255) aCATCATGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTggg < 1:581400/69‑1 (MQ=255) aCATCATGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTggg < 1:615664/69‑1 (MQ=255) catcatGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTggta > 1:2619483/1‑67 (MQ=255) catcatGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGa > 1:493148/1‑69 (MQ=255) catcatGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGa > 1:327215/1‑69 (MQ=255) catcatGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGa > 1:2909708/1‑69 (MQ=255) catcatGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGa > 1:1077441/1‑69 (MQ=255) atGAAACTGATGTCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCg < 1:897093/58‑1 (MQ=255) atGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCg < 1:2809872/58‑1 (MQ=255) atGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCg < 1:1525427/58‑1 (MQ=255) atGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCg < 1:2632173/58‑1 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGAt > 1:1862770/1‑52 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTggg > 1:2654411/1‑62 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTggg > 1:540224/1‑62 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTggg > 1:2501974/1‑62 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTggg > 1:2242124/1‑62 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTggg > 1:965862/1‑62 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTggg > 1:2148985/1‑62 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTggg > 1:1943679/1‑62 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTggg > 1:2724999/1‑62 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTggg > 1:1096950/1‑62 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTggg > 1:1343991/1‑62 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTggg > 1:1327047/1‑62 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTggg > 1:1674247/1‑62 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTggg > 1:1257925/1‑62 (MQ=255) gAAATTGATGGCCATTCAGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTggg > 1:119525/1‑62 (MQ=255) gAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTGc < 1:10966/68‑1 (MQ=255) gAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa > 1:1350977/1‑69 (MQ=255) gATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCca < 1:958035/69‑1 (MQ=255) gATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCca < 1:365944/69‑1 (MQ=255) gATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCca > 1:803949/1‑69 (MQ=255) gATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCca < 1:2099290/69‑1 (MQ=255) gATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCca > 1:426725/1‑69 (MQ=255) aTGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGt > 1:2524044/1‑42 (MQ=255) gCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTGc > 1:2955808/1‑58 (MQ=255) cATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCACATTc < 1:1780448/68‑1 (MQ=255) aGGAGCTGGCACGCGGTGAACAATGCTTCCTTGATTCCGAGTGGGATTTGCa < 1:1991855/52‑1 (MQ=255) aGGAGCAGGCACGCGGTTAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:421154/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:3013347/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:658570/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:1275907/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:3076281/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:2875035/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:1113778/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:3171680/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:1150740/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:2750433/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:1836814/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:2032147/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:2170298/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:933599/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:923124/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:24151/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:250911/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:876035/52‑1 (MQ=255) aGGAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:82005/52‑1 (MQ=255) ggAGCAGGCACGCGGTGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCa < 1:3366081/51‑1 (MQ=255) aaCAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTg > 1:1679382/1‑47 (MQ=255) aaCAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTg > 1:2849703/1‑47 (MQ=255) aaCAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTg > 1:1131892/1‑47 (MQ=255) aaCAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTg > 1:3238933/1‑47 (MQ=255) aaCAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTg > 1:569257/1‑47 (MQ=255) aaCAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTg > 1:2362827/1‑47 (MQ=255) aCAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCACATTCAGGTCGctct > 1:3197294/1‑69 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTATCCCTGGCGACGCa < 1:3322728/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:1127537/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:823430/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:1057119/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:683920/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:1805016/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:1778253/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:2581202/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:2420203/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:1534861/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:2679548/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:3416159/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:2783634/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:3216775/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:2175871/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:32909/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATTCAGGTAGCCCTGGCGACGCa < 1:3308590/69‑1 (MQ=255) cggtgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCATATCCAGGTAGCCCTGGCGACGCa < 1:3127360/69‑1 (MQ=255) ggcgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCACATTCAGGTCGCTCTGGCGACGCAg < 1:501167/69‑1 (MQ=255) ggcgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCACATTCAGGTCGCTCTGGCGACGCAg < 1:793969/69‑1 (MQ=255) ggcgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCACATTCAGGTCGCTCTGGCGACGCAg < 1:1374434/69‑1 (MQ=255) ggcgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCACATTCAGGTCGCTCTGGCGACGCAg < 1:498968/69‑1 (MQ=255) ggcgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCACATTCAGGTCGCTCTGGCGACGCAg < 1:1793970/69‑1 (MQ=255) cgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCACATTCAGGTCGCTCTGGCGACGCAGaa < 1:665164/69‑1 (MQ=255) cgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCACATTCAGGTCGCTCTGGCGACGCAGaa < 1:2584101/69‑1 (MQ=255) cgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCACATTCAGGTCGCTCTGGCGACGCAGaa < 1:2793465/69‑1 (MQ=255) cgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCACATTCAGGTCGCTCTGGCGACGCAGaa < 1:562389/69‑1 (MQ=255) cgAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCACATTCAGGTCGCTCTGGCGACGCAGaa < 1:3313315/69‑1 (MQ=255) cgAACAATGCTTCCGTAATTCCGAGTGGGATTTGCAGTTCCACATTCAGGTCGCTCTGGCGACGCAGaa < 1:2347959/69‑1 (MQ=255) | GCAACTCAGGTAACGAAACAGGACATCATGAAACTGATGGCCATTCAGGAACAGGCGCGCGGCGAACAATGCTTCCGTGATTCCGAGTGGGATTTGCAGTTCCACATTCAGGTCGCTCTGGCGACGCAGAA > minE/2082190‑2082320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |