| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,082,504 | T→C | 34.5% | H217H (CAT→CAC) | exuR → | DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,082,504 | 0 | T | C | 34.5% | 57.5 / 47.6 | 84 | H217H (CAT→CAC) | exuR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base T (4/51); new base C (22/7); total (26/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.56e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.79e-01 | |||||||||||
CAAATCCTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCC > minE/2082442‑2082564 | cAAATCCTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTTGCAATGTGGCAGCAt > 1:2757021/1‑63 (MQ=255)cAAATCCTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCAt > 1:238692/1‑63 (MQ=255)cAAATCCTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCAt > 1:3070919/1‑63 (MQ=255)cAAATCCTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCAt > 1:1713851/1‑63 (MQ=255)cAAATCCTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCAt > 1:2772142/1‑63 (MQ=255)cAAATCCTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGaa > 1:1767413/1‑69 (MQ=255) aaaTCCTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGaaa < 1:1759355/69‑1 (MQ=255) aaaTCCTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGaaa < 1:2518765/69‑1 (MQ=255) aTCCTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAac > 1:1682190/1‑69 (MQ=255) cgcTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCa > 1:2617824/1‑69 (MQ=255) gATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGaa < 1:2217422/69‑1 (MQ=255) cATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGAt < 1:3345238/47‑1 (MQ=255) cATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGAt < 1:842073/47‑1 (MQ=255) gctgctAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:822840/69‑1 (MQ=255) gctgctAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:3037088/69‑1 (MQ=255) gctgctAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:1328960/69‑1 (MQ=255) gctgctAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:1730115/69‑1 (MQ=255) gctgctAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:1204272/69‑1 (MQ=255) cTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGTAACCAGCGACGACTTCg < 1:511703/67‑1 (MQ=255) cTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCg < 1:2788991/67‑1 (MQ=255) cTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCg < 1:429085/67‑1 (MQ=255) cTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCg < 1:3143243/67‑1 (MQ=255) cTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCg < 1:26554/67‑1 (MQ=255) cAATGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:1601389/56‑1 (MQ=255) cAATGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:1391861/56‑1 (MQ=255) cAATGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:3232438/56‑1 (MQ=255) cAATGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:3005419/56‑1 (MQ=255) cAATGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:2197514/56‑1 (MQ=255) cAATGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:608340/56‑1 (MQ=255) cAATGTGGAAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:324371/56‑1 (MQ=255) aaTGTGTCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:3301853/1‑51 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:2843194/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:2690662/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:2841518/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:29703/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:3304318/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:2959245/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:2310936/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:1048661/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:3112096/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:84964/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:1449797/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:162146/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:1759800/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:3015014/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:3006738/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:752212/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:724422/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:201514/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:2019356/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:2140453/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:3205204/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:2566220/67‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCa < 1:2254654/68‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCa < 1:268197/68‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCa < 1:2100750/68‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCa < 1:1640726/68‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTACTTAACGAAACCAGCGACGACTTCGAGTTc < 1:3084638/67‑1 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTaa > 1:1281128/1‑42 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:363500/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:976764/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:610518/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:768933/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:81851/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:93034/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:3003719/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:1089136/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:1101686/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:1240300/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:1448792/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:1486560/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:1992390/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:210846/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:2579679/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:2652657/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:2867123/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:2872827/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:2976989/1‑51 (MQ=255) aaTGTGGCAGCACCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:2985677/1‑51 (MQ=255) tgGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGa < 1:2881088/41‑1 (MQ=255) tgGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGa < 1:1999212/41‑1 (MQ=255) tgGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGa < 1:2902775/41‑1 (MQ=255) tgGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGa < 1:2972820/41‑1 (MQ=255) tgGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGa < 1:3077071/41‑1 (MQ=255) tgGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGcc > 1:711216/1‑69 (MQ=255) tgGCAGCATCTGGAAAACACCAAGATCATCTTATTTAACGa < 1:1862760/41‑1 (MQ=255) tgGCAGCATCTGGAAAACACCAAGATCATCTTATTTAACGa < 1:1858830/41‑1 (MQ=255) ggCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGa < 1:2243698/40‑1 (MQ=255) agcaTCTGGAAAACACCAAGATCATGTTATTTAACGa < 1:3226023/37‑1 (MQ=255) | CAAATCCTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCC > minE/2082442‑2082564 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |