Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 2,089,147 A→G 47.8% A90A (GCT→GCC yhaJ ← predicted DNA‑binding transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,089,1470AG47.8% ‑3.5 / 38.8 46A90A (GCT→GCCyhaJpredicted DNA‑binding transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base A (14/10);  new base G (9/13);  total (23/23)
Fisher's exact test for biased strand distribution p-value = 3.76e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.83e-01

AAAAAGGCAGGTGTCGGTACCAGCGCTTCGGTCACAATGGTGAGATGCGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGCTCCAACA  >  minE/2089079‑2089208
                                                                    |                                                             
aaaaaGGCAGGTGTCGGTACCAGCGCTTCGGTCACAATGGTGAGATGCGTTTCCCAACCGCGCGCgaga                                                               >  1:856301/1‑69 (MQ=255)
aaaaaGGCAGGTGTCGGTACCAGCGCTTCGGTCACAATGGTGAGATGCGTTTCCCAACCGCGCGCgaga                                                               >  1:2615469/1‑69 (MQ=255)
aaaaaGGCAGGTGTCGGTACCAGCGCTTCGGTCACAATGGTGAGATGCGTTTCCCAACCGCGCGCgaga                                                               >  1:1810129/1‑69 (MQ=255)
aaaaaGGCAGGTGTCGGTACCAGCGCTTCGGTCACAATGGTGAGATGCGTTTCCCAACCGCGCGCgaga                                                               >  1:1806071/1‑69 (MQ=255)
            gtCGGTACCAGCGCTTCGGTCACAATGGTGAGATGCGTTTCCCAACCGCGCGCGAGAGCTTCCGCATc                                                    >  1:3055676/1‑68 (MQ=255)
            gtCGGTACCAGCGCTTCGGTCACAATGGTGAGATGCGTTTCCCAACCGCGCGCGAGAGCTTCCGCATc                                                    >  1:214884/1‑68 (MQ=255)
                  aCCAGCGCTTCGGTCACAATGGTGAGATGCGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTc                                             >  1:1174354/1‑69 (MQ=255)
                  aCCAGCGCTTCGGTCACAATGGTGAGATGCGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTc                                             >  1:1244449/1‑69 (MQ=255)
                  aCCAGCGCTTCGGTCACAATGGTGAGATGCGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTc                                             >  1:2782391/1‑69 (MQ=255)
                  aCCAGCGCTTCGGTCACAATGGTGAGATGCGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTc                                             >  1:1474481/1‑69 (MQ=255)
                  aCCAGCGCTTCGGTCACAATGGTGAGATGCGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTc                                             >  1:3102362/1‑69 (MQ=255)
                                cacaATGGTGAGATGCGTTTCCCAACCGCGCGCGAGGGCTTCCGCATCggtag                                               <  1:3090683/53‑1 (MQ=255)
                                cacaATGGTGAGATGCGTTTCCCAACCGCGCGCGAGGGCTTCCGCATCggtag                                               <  1:2859321/53‑1 (MQ=255)
                                cacaATGGTGAGATGCGTTTCCCAACCGCGCGCGAGGGCTTCCGCATCggtag                                               <  1:2792538/53‑1 (MQ=255)
                                cacaATGGTGAGATGCGTTTCCCAACCGCGCGCGAGGGCTTCCGCATCggtag                                               <  1:2270698/53‑1 (MQ=255)
                                cacaATGGTGAGATGCGTTTCCCAACCGCGCGCGAGGGCTTCCGCATCggtag                                               <  1:1821746/53‑1 (MQ=255)
                                cacaATGGTGAGATGCGTTTCCCAACCGCGCGCGAGGGCTTCCGCATCggtag                                               <  1:1805044/53‑1 (MQ=255)
                                cacaATGGTGAGATGCGTTTCCCAACCGCGCGCGAGGGCTTCCGCATCggtag                                               <  1:1492275/53‑1 (MQ=255)
                                cacaATGGTGAGATGCGTTTCCCAACCGCGCGCGAGGGCTTCCGCATCggtag                                               <  1:1240980/53‑1 (MQ=255)
                                cacaATGGTGAGATGCGTTTCCCAACCGCGCGCGAGGGCTTCCGCATCggtag                                               <  1:638418/53‑1 (MQ=255)
                                cacaATGGTGAGATGCGTTTCCCAACCGCGCGCGAGGGCTTCCGCATCggtag                                               <  1:1149160/53‑1 (MQ=255)
                                cacaATGGTGAGATGCGTTTCCCAACCGCGCGCGAGGGCTTCCGCATCggtag                                               <  1:631676/53‑1 (MQ=255)
                                cacaATGGTGAGATGCGTTTCCCAACCGCGCGCAAGGGCTTCCGCATCggtag                                               <  1:1467250/53‑1 (MQ=255)
                                 acaATGGTGAGATGCGTTTCCCAACCGCGCGCGAGGGCTTCCGCATCggtag                                               <  1:3133033/52‑1 (MQ=255)
                                         gagaTGCGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCaa                      <  1:2330466/69‑1 (MQ=255)
                                         gagaTGCGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCaa                      <  1:2363986/69‑1 (MQ=255)
                                         gagaTGCGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCaa                      <  1:771917/69‑1 (MQ=255)
                                          agaTGCGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCaa                      <  1:1934008/68‑1 (MQ=255)
                                              gCGTTTCCCAACCGCGCGCGAGAGATTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCAAAAcgc                 >  1:553015/1‑69 (MQ=255)
                                              gCGTTTCCCAACCGCGCGCGAGAGATTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCAAAAcgc                 >  1:1305088/1‑69 (MQ=255)
                                               cGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCAAAAcgcg                >  1:2975921/1‑69 (MQ=255)
                                               cGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCAAAAcgcg                >  1:2402004/1‑69 (MQ=255)
                                               cGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCAAAAcgcg                >  1:2514087/1‑69 (MQ=255)
                                               cGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCAAGCAAAAcgcg                >  1:1754153/1‑69 (MQ=255)
                                               cGTTTCACAACCGCGCGCGAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCAAAAcgcg                >  1:436649/1‑69 (MQ=255)
                                                         ccGCGCGCGAGGGCTTCCGCATCGGTAGTCAGTTTATCTGCGGCTTCCAGCaa                      >  1:1596982/1‑53 (MQ=255)
                                                         ccGCGCGCGAGGGCTTCCGCATCGGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGTTcc      >  1:3289212/1‑69 (MQ=255)
                                                         ccGCGCGCGAGGGCTTCCGCATCGGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGTTcc      >  1:2343090/1‑69 (MQ=255)
                                                         ccGCGCGCGAGGGCTTCCGCATCGGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGTTcc      >  1:2561324/1‑69 (MQ=255)
                                                         ccGCGCGCGAGGGCTTCCGCATCGGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGTTcc      >  1:239176/1‑69 (MQ=255)
                                                         ccGCGCGCGAGGGCTTCCGCATCGGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGTTcc      >  1:2161233/1‑69 (MQ=255)
                                                         ccGCGCGCGAGGGCTTCCGCATCGGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGTTcc      >  1:1339605/1‑69 (MQ=255)
                                                         ccGCGCGCGAGGGCTTCCGCATCGGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGTTcc      >  1:1112347/1‑69 (MQ=255)
                                                         ccGCGCGCGAGGGCTTCCGCATCGGTAGTCAGTTTATCTACGGCTTCCAGCAAAACGCGCCCTCGTTcc      >  1:156320/1‑69 (MQ=255)
                                                             gcgcgAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGCTCcaaca  <  1:1109580/69‑1 (MQ=255)
                                                             gcgcgAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGCTCcaaca  <  1:3357385/69‑1 (MQ=255)
                                                             gcgcgAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGCTCcaaca  <  1:1965769/69‑1 (MQ=255)
                                                             gcgcgAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGCTCcaaca  <  1:1667796/69‑1 (MQ=255)
                                                             gcgcgAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGCTCcaaca  <  1:654216/69‑1 (MQ=255)
                                                              cgcgAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGCTCcaaca  <  1:3168339/68‑1 (MQ=255)
                                                                    |                                                             
AAAAAGGCAGGTGTCGGTACCAGCGCTTCGGTCACAATGGTGAGATGCGTTTCCCAACCGCGCGCGAGAGCTTCCGCATCAGTAGTCAGTTTATCTGCGGCTTCCAGCAAAACGCGCCCTCGCTCCAACA  >  minE/2089079‑2089208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: