| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,099,098 | A→G | 39.8% | G299G (GGT→GGC) | garP ← | predicted (D)‑galactarate transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,099,098 | 0 | A | G | 39.8% | 42.6 / 68.8 | 98 | G299G (GGT→GGC) | garP | predicted (D)‑galactarate transporter |
| Reads supporting (aligned to +/- strand): ref base A (28/31); new base G (20/19); total (48/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-03 | |||||||||||
GGGTCAGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGAATCGACATGCCTTTT > minE/2099031‑2099155 | gggTCAGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCTCAAAAc < 1:1083977/69‑1 (MQ=255)gggTCAGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAAc < 1:3141083/69‑1 (MQ=255)gggTCAGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAAc < 1:2741203/69‑1 (MQ=255)gggTCAGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAAc < 1:1437061/69‑1 (MQ=255)gggTCAGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAAc < 1:880754/69‑1 (MQ=255) gTCAGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACca < 1:412996/69‑1 (MQ=255) gTCAGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACca < 1:325174/69‑1 (MQ=255) gTCAGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACca < 1:324762/69‑1 (MQ=255) gTCAGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACca < 1:2559784/69‑1 (MQ=255) tCAGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACca < 1:65342/68‑1 (MQ=255) tCAGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCAGCAAAACca < 1:588255/68‑1 (MQ=255) aGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACcacac > 1:2858740/1‑69 (MQ=255) aGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACcacac > 1:2351201/1‑69 (MQ=255) aTAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTg < 1:2071634/69‑1 (MQ=255) aTAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTg < 1:1099872/69‑1 (MQ=255) tAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGc > 1:2383151/1‑69 (MQ=255) tAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGc > 1:181454/1‑69 (MQ=255) tAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGc > 1:2229980/1‑69 (MQ=255) tAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGc > 1:2354515/1‑69 (MQ=255) tAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGc > 1:2378417/1‑69 (MQ=255) tAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGc > 1:2602527/1‑69 (MQ=255) tAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGc > 1:2637285/1‑69 (MQ=255) tAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGc > 1:2878493/1‑69 (MQ=255) tAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGc > 1:2970891/1‑69 (MQ=255) tAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGc > 1:415542/1‑69 (MQ=255) tAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGc > 1:169461/1‑69 (MQ=255) tAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGc > 1:1704116/1‑69 (MQ=255) caaaCCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGc < 1:3190342/68‑1 (MQ=255) caaaCCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGc < 1:402172/68‑1 (MQ=255) caaaCCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGc < 1:2018005/68‑1 (MQ=255) caaaCCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGc < 1:2028908/68‑1 (MQ=255) caaaCCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGc < 1:758738/68‑1 (MQ=255) aCCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCt > 1:2729425/1‑67 (MQ=255) aCCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTgg > 1:1244358/1‑69 (MQ=255) aCCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTgg > 1:1706415/1‑69 (MQ=255) aCCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTgg > 1:779619/1‑69 (MQ=255) ttGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGCCGGAATCGAg < 1:1868613/69‑1 (MQ=255) ttGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGCCGGAATCGAg < 1:2874470/69‑1 (MQ=255) ttGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGCCGGAATCGAg < 1:1561527/69‑1 (MQ=255) ttGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGCCGGAATCGAg < 1:475829/69‑1 (MQ=255) ttGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGCCGGAATCGAg < 1:58726/69‑1 (MQ=255) tGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGCCGGAATCGAg < 1:1773131/68‑1 (MQ=255) tGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGCCGGAATCGAg < 1:768935/68‑1 (MQ=255) tGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTg < 1:1982966/57‑1 (MQ=255) cAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCg > 1:2082090/1‑67 (MQ=255) cAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGAc < 1:1352525/69‑1 (MQ=255) cAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGAc < 1:2990655/69‑1 (MQ=255) cAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGAc < 1:194552/69‑1 (MQ=255) cAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGAc < 1:1243216/69‑1 (MQ=255) cAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGAc < 1:2167340/69‑1 (MQ=255) cAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGAc < 1:772332/69‑1 (MQ=255) gATAATCCGAGAAGACACCTCCCAGCACTCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGAc < 1:1589243/67‑1 (MQ=255) aTCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGAcc < 1:187159/69‑1 (MQ=255) gaagaCACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACttt < 1:220707/69‑1 (MQ=255) gaagaCACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACttt < 1:1215223/69‑1 (MQ=255) gaagaCACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACttt < 1:2260991/69‑1 (MQ=255) gaagaCACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACttt < 1:1973742/69‑1 (MQ=255) gaagaCACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACttt < 1:1289413/69‑1 (MQ=255) gaagaCACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACttt < 1:2037788/69‑1 (MQ=255) gaagaCACCTCCCAGCACGCCGCCCGCAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACttt < 1:214328/69‑1 (MQ=255) gaCACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAg > 1:2649787/1‑69 (MQ=255) gaCACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAg > 1:1580357/1‑69 (MQ=255) gaCACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAg > 1:2165214/1‑69 (MQ=255) gaCACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAg > 1:128757/1‑69 (MQ=255) cacCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGAcc > 1:303915/1‑58 (MQ=255) cacCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGag > 1:2906446/1‑68 (MQ=255) cacCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGaa > 1:2770317/1‑69 (MQ=255) cacCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGaa > 1:798740/1‑69 (MQ=255) cacCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGaa > 1:246621/1‑69 (MQ=255) tCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGAATCGa < 1:2173098/69‑1 (MQ=255) tCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGAATCGa < 1:1488947/69‑1 (MQ=255) tCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGAATCGa < 1:684888/69‑1 (MQ=255) cccAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGAATCGa < 1:1386835/68‑1 (MQ=255) ccAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGAATCGa < 1:227554/67‑1 (MQ=255) ccgcccgcAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGAATCGACATGCCtttt < 1:390948/69‑1 (MQ=255) ccgcccgcAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGAATCGACATGCCtttt < 1:3328746/69‑1 (MQ=255) ccgcccgcAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGAATCGACATGCCtttt < 1:1282920/69‑1 (MQ=255) ccgcccgcAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGAATCGACATGCCtttt < 1:971/69‑1 (MQ=255) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:2569876/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:180052/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:1969256/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:1783844/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:2181460/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:1714281/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:1706240/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:1701748/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:672729/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:312105/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:2641202/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:2649857/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:2749502/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:2836220/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:2851394/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:286368/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:2902879/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACtt > 1:381416/1‑42 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAGGCGACCAGACCCACt > 1:2491174/1‑41 (MQ=38) cAAAGCCACACAGTGCCGGAATCGAG‑‑GACCAGACCCACtt > 1:1411486/1‑40 (MQ=255) | GGGTCAGGGATAAACCGCGTTTGATCAGATAATCCGAGAAGACACCTCCCAGCACGCCGCCCGCAAAACCACACAGTGCTGGAATCGAGGCGACCAGACCCACTTTCAGAATCGACATGCCTTTT > minE/2099031‑2099155 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |