Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 2,130,221 | A→G | 15.9% | C228C (TGT→TGC) | mtr ← | tryptophan transporter of high affinity |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 2,130,221 | 0 | A | G | 15.9% | 174.1 / 19.4 | 106 | C228C (TGT→TGC) | mtr | tryptophan transporter of high affinity |
Reads supporting (aligned to +/- strand): ref base A (56/33); new base G (4/13); total (60/46) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 3.38e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.48e-01 |
Only 100 of 106 total aligned reads displayed.
GTTACCCATCGTCGCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTG > minE/2130155‑2130283 | gTTACCCATCGTCGCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACa < 1:2008042/69‑1 (MQ=255) aCCCATCGTCGCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACAttt > 1:198934/1‑69 (MQ=255) aCCCATCGTCGCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACAttt > 1:1929783/1‑69 (MQ=255) gtcgCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATg > 1:3107680/1‑69 (MQ=255) gtcgCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATg > 1:3149050/1‑69 (MQ=255) gtcgCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATg > 1:3150728/1‑69 (MQ=255) gtcgCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATg > 1:3201756/1‑69 (MQ=255) gtcgCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATg > 1:2676400/1‑69 (MQ=255) gtcgCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATg > 1:2626567/1‑69 (MQ=255) gtcgCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATg > 1:2609312/1‑69 (MQ=255) gtcgCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATg > 1:3268656/1‑69 (MQ=255) gtcgCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATg > 1:387415/1‑69 (MQ=255) gtcgCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATg > 1:1274878/1‑69 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:605608/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:702555/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:1093705/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:2599698/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:3246023/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:3374061/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:3375344/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:3406787/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:2165311/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:3416627/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:2829280/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:1814641/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:347299/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:3163978/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:470018/57‑1 (MQ=255) aGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTc < 1:3035264/57‑1 (MQ=255) aGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCtt > 1:1055069/1‑69 (MQ=255) aGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCtt > 1:2085194/1‑69 (MQ=255) aGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCt > 1:1172761/1‑68 (MQ=255) aGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCtt < 1:3109494/69‑1 (MQ=255) aGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCtt < 1:2013378/69‑1 (MQ=255) aGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCtt < 1:324095/69‑1 (MQ=255) aGATGGGATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCtt > 1:437524/1‑69 (MQ=255) ataCAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGt > 1:1734718/1‑68 (MQ=255) ataCAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGt > 1:569661/1‑68 (MQ=255) ataCAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGt > 1:1463904/1‑68 (MQ=255) ataCAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGt > 1:3298392/1‑68 (MQ=255) ataCAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGt > 1:531961/1‑68 (MQ=255) ataCAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGt > 1:2173079/1‑68 (MQ=255) ataCAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGt > 1:1882711/1‑68 (MQ=255) taCAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACTATGGTTTTCGGATCTTTGCCGTaa < 1:358446/69‑1 (MQ=255) taCAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCTTTGCCGTaa < 1:2753006/69‑1 (MQ=255) taCAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCTTTGCCGTaa < 1:3009938/69‑1 (MQ=255) taCAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCTTTGCCGTaa < 1:1266718/69‑1 (MQ=255) taCAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCTTTGCCGTaa < 1:1070624/69‑1 (MQ=255) taCAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCTTTGCCGTaa < 1:1166353/69‑1 (MQ=255) taCAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCTTTGCCGTaa < 1:3311532/69‑1 (MQ=255) taCAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCTTTGCCGTaa < 1:654948/69‑1 (MQ=255) taCAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCTTTGCCGTaa < 1:1188930/69‑1 (MQ=255) taCAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCTTTGCCGTaa < 1:1675154/69‑1 (MQ=255) taCAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCTTTGCCGTaa < 1:645497/69‑1 (MQ=255) taCAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCTTTGCCGTaa < 1:548570/69‑1 (MQ=255) taCAGCGCCAGCGCCATCAGCGTACCGTACACCAGGCATTTCACGATGGTTTTCGGATCTTTGCCGTaa < 1:1387776/69‑1 (MQ=255) cagcgccagcgcCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGt < 1:3215718/65‑1 (MQ=255) cagcgccagcgcCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGt < 1:914350/65‑1 (MQ=255) cagcgccagcgcCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGt < 1:918395/65‑1 (MQ=255) cagcgccagcgcCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGt < 1:1017563/65‑1 (MQ=255) cagcgccagcgcCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGt < 1:2979894/65‑1 (MQ=255) cagcgccagcgcCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTaa < 1:2571574/67‑1 (MQ=255) cagcgccagcgcCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAAt > 1:2985759/1‑68 (MQ=255) cagcgccagcgcCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAAt > 1:1494151/1‑68 (MQ=255) cagcgccagcgcCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAAt > 1:3270242/1‑68 (MQ=255) ccagcgccaTCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTtc < 1:2758455/68‑1 (MQ=255) cagctccaTCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGt < 1:1213619/59‑1 (MQ=255) aGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTaa > 1:1479799/1‑51 (MQ=255) aGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTgg > 1:59387/1‑68 (MQ=255) aGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGc > 1:1665761/1‑69 (MQ=255) aGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGc > 1:150443/1‑69 (MQ=255) aGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGc > 1:50445/1‑69 (MQ=255) aGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGc > 1:519203/1‑69 (MQ=255) aGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGc > 1:632320/1‑69 (MQ=255) aGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGc > 1:1055761/1‑69 (MQ=255) aGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGc > 1:807709/1‑69 (MQ=255) aGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGc > 1:1000508/1‑69 (MQ=255) aGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGc > 1:313313/1‑69 (MQ=255) aGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGc > 1:2944888/1‑69 (MQ=255) aGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGc > 1:2790120/1‑69 (MQ=255) aGCGTACCGTACACCAGACATTTCACGATGGTTTTAGTATCTTTGCCGTAATACTTCATCAGGCTTGGc > 1:1168873/1‑69 (MQ=255) aGCGGACCGTACACCAGACATTTCACGATGGGTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGc > 1:2233875/1‑69 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGt > 1:1998239/1‑68 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGt > 1:726368/1‑68 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGt > 1:668740/1‑68 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGt > 1:2563997/1‑68 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGt > 1:2471440/1‑68 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGt > 1:1475148/1‑68 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGt > 1:2450744/1‑68 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGt > 1:2431288/1‑68 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGt > 1:2264854/1‑68 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGt > 1:148761/1‑68 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGt > 1:406731/1‑68 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGt > 1:3054610/1‑68 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGt > 1:362754/1‑68 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGt > 1:1727629/1‑68 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTg < 1:1289359/69‑1 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTg < 1:1273945/69‑1 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTg < 1:2798872/69‑1 (MQ=255) cacCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTg < 1:1025784/69‑1 (MQ=255) | GTTACCCATCGTCGCCAGCAACCAGATGGTATACAGCGCCAGCGCCATCAGCGTACCGTACACCAGACATTTCACGATGGTTTTCGGATCTTTGCCGTAATACTTCATCAGGCTTGGCACGTTACCGTG > minE/2130155‑2130283 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |