| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,130,596 | G→A | 16.2% | T103T (ACC→ACT) | mtr ← | tryptophan transporter of high affinity |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,130,596 | 0 | G | A | 16.2% | 229.6 / 25.1 | 134 | T103T (ACC→ACT) | mtr | tryptophan transporter of high affinity |
| Reads supporting (aligned to +/- strand): ref base G (45/67); new base A (20/2); total (65/69) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.90e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.50e-01 | |||||||||||
Only 100 of 134 total aligned reads displayed.
GTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCT > minE/2130533‑2130650 | gTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAg < 1:532943/69‑1 (MQ=255)gTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAg < 1:1792108/69‑1 (MQ=255)gTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAg < 1:2281584/69‑1 (MQ=255)gTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAg < 1:1600427/69‑1 (MQ=255)gTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAg < 1:1570024/69‑1 (MQ=255)gTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAg < 1:1434171/69‑1 (MQ=255)gTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAg < 1:1203901/69‑1 (MQ=255) tttAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAg < 1:1489665/68‑1 (MQ=255) tctcTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAg < 1:2608884/58‑1 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:126116/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:2004961/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:2101960/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:1812188/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:3189031/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:3414930/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:2147367/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:2677715/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:1631414/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:320011/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:820279/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:898343/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:2661593/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:1532304/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:857300/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:2348143/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:1442867/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:1436378/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:2653557/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:1405944/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:2582367/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:127535/1‑67 (MQ=255) tctGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGACAGGATATAGAGca > 1:127714/1‑67 (MQ=255) tctGCGAAGGTGAGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGca > 1:1472793/1‑67 (MQ=255) tgtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAAt > 1:2984141/1‑67 (MQ=255) tgtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATg > 1:3206290/1‑68 (MQ=255) tgtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATg > 1:2143503/1‑68 (MQ=255) tgtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATg > 1:1220504/1‑68 (MQ=255) tgtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATg > 1:306261/1‑68 (MQ=255) gtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAg < 1:277749/45‑1 (MQ=255) gtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAg < 1:1844827/45‑1 (MQ=255) gtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:694390/69‑1 (MQ=255) gtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:2839353/69‑1 (MQ=255) gtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:872038/69‑1 (MQ=255) gtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:2107635/69‑1 (MQ=255) gtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:1127730/69‑1 (MQ=255) gtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:3001106/69‑1 (MQ=255) gtgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:2269675/69‑1 (MQ=255) tgATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:3265861/68‑1 (MQ=255) aTGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAAt > 1:696543/1‑69 (MQ=255) cAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:3359740/63‑1 (MQ=255) cAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:1496099/63‑1 (MQ=255) cAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:1493187/63‑1 (MQ=255) cAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:2741332/63‑1 (MQ=255) cAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGcc > 1:2575105/1‑69 (MQ=255) aTCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:1349687/59‑1 (MQ=255) aTCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:2382176/59‑1 (MQ=255) aTCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:2032942/59‑1 (MQ=255) aTCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:2367123/59‑1 (MQ=255) aTCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:1728988/59‑1 (MQ=255) aTCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:3191330/59‑1 (MQ=255) aTCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:1828574/59‑1 (MQ=255) aTCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:3033988/59‑1 (MQ=255) aTCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:3186995/59‑1 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:2882196/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:3291913/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:3385969/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:1028534/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:509551/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:2699130/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:2320456/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:2204425/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:2084245/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:774548/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:1808509/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:1734841/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:1622818/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:1562216/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:892307/1‑54 (MQ=255) tCGCACCATTAGCAGAGATATAGGCATAAGTGAGGATATAGAGAACGAAGGCaa > 1:1099480/1‑54 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAgt > 1:2060267/1‑50 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGc > 1:596541/1‑52 (MQ=255) tCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGc > 1:1060112/1‑52 (MQ=255) gAACCACTGGCAGAAATATAGGGATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:935497/56‑1 (MQ=255) gAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:1050354/56‑1 (MQ=255) gAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:1125738/56‑1 (MQ=255) gAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGa < 1:1405693/56‑1 (MQ=255) cccTGGAAGAAATATAGGCGTAAGTCAGGATATAGAGCACAAAGGCAATgg < 1:238522/49‑1 (MQ=255) cAGAAATATAGGCGTAAGTCAGGATATAGAGCACAAAGGCAATgg < 1:2416999/45‑1 (MQ=255) aGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGcc < 1:2007465/69‑1 (MQ=255) gAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGcc < 1:516881/68‑1 (MQ=255) gAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCt < 1:2047358/69‑1 (MQ=255) gAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCt < 1:1191015/69‑1 (MQ=255) gAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCt < 1:1523606/69‑1 (MQ=255) gAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCt < 1:826686/69‑1 (MQ=255) gAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCt < 1:2730585/69‑1 (MQ=255) gAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCt < 1:27444/69‑1 (MQ=255) gAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCt < 1:380114/69‑1 (MQ=255) gAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCt < 1:2850068/69‑1 (MQ=255) aaaTATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCt < 1:1615390/68‑1 (MQ=255) atatAGGCATAGGTCAGGATATAGACCACAAAGGCAATGGa < 1:3336410/41‑1 (MQ=255) | GTTTAGTGACATCTCTGCGAAGGTGTGATGCAGAATCGAACCACTGGCAGAAATATAGGCATAGGTCAGGATATAGAGCACAAAGGCAATGGAAATGCCGTTGACCACGTTCCAGCCT > minE/2130533‑2130650 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |