Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 2,138,498 G→A 59.7% D870D (GAC→GAT infB ← fused protein chain initiation factor 2, IF2

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,138,4980GA59.7% 47.1 / 82.1 114D870D (GAC→GATinfBfused protein chain initiation factor 2, IF2
Reads supporting (aligned to +/- strand):  ref base G (17/29);  new base A (13/55);  total (30/84)
Fisher's exact test for biased strand distribution p-value = 5.02e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 126 total aligned reads displayed.

ATGGTACGTTGGATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCGTTAACGTCATCTTTGAAG  >  minE/2138442‑2138567
                                                        |                                                                     
aTGGTACGTTGGATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGGCGTTGt                                                                <  1:2981636/64‑1 (MQ=255)
  ggTACGTTGGATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCtt                                                         <  1:1913671/69‑1 (MQ=255)
  ggTACGTTGGATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCtt                                                         <  1:2602775/69‑1 (MQ=255)
  ggTACGTTGGATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCtt                                                         <  1:1125848/69‑1 (MQ=255)
  ggTACGTTGGATCTCGATGATTTCGAATACTACGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCtt                                                         <  1:109417/69‑1 (MQ=255)
        ttGGATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCTTAACGcc                                                   <  1:2348349/69‑1 (MQ=255)
        ttGGATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCTTAACGcc                                                   <  1:270334/69‑1 (MQ=255)
        ttGGATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCTTAACGcc                                                   <  1:2350449/69‑1 (MQ=255)
          ggATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCtt                                                         <  1:200267/61‑1 (MQ=255)
          ggATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCtt                                                         <  1:1891262/61‑1 (MQ=255)
          ggATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCtt                                                         <  1:2890634/61‑1 (MQ=255)
          ggATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCtt                                                         <  1:1765429/61‑1 (MQ=255)
          ggATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCtt                                                         <  1:2244357/61‑1 (MQ=255)
          ggATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCtt                                                         <  1:2153820/61‑1 (MQ=255)
          ggATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCtt                                                         <  1:2442397/61‑1 (MQ=255)
                    gatTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGt                                                                >  1:2235681/1‑44 (MQ=255)
                    gatTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGt                                                                >  1:1087208/1‑44 (MQ=255)
                    gatTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGt                                                                >  1:168939/1‑44 (MQ=255)
                    gatTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGt                                                                >  1:160082/1‑44 (MQ=255)
                    gatTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGt                                                                >  1:1704315/1‑44 (MQ=255)
                    gatTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGt                                                                >  1:3205790/1‑44 (MQ=255)
                    gatTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGt                                                                >  1:1710220/1‑44 (MQ=255)
                    gatTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGt                                                                >  1:610767/1‑44 (MQ=255)
                    gatTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGt                                                                >  1:1747710/1‑44 (MQ=255)
                     atTTCGAATACTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTc                                       >  1:113140/1‑68 (MQ=255)
                     atTTCGAATACTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTc                                       >  1:1671204/1‑68 (MQ=255)
                     atTTCGAATACTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTc                                       >  1:2343212/1‑68 (MQ=255)
                     atTTCGAATACTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTc                                       >  1:3075399/1‑68 (MQ=255)
                     atTTCGAATACTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTc                                       >  1:3083824/1‑68 (MQ=255)
                     atTTCGAATACTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTc                                       >  1:337582/1‑68 (MQ=255)
                     atTTCGAATACTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTc                                       >  1:13597/1‑68 (MQ=255)
                     atTTCGAATACTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTc                                       >  1:1319619/1‑68 (MQ=255)
                     atTTCGAATACTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTc                                       >  1:1251130/1‑68 (MQ=255)
                     atTTCGAATACTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTc                                       >  1:1186221/1‑68 (MQ=255)
                          gAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCTTAACGCCGATACCACATTCCATAc                                  <  1:3200202/68‑1 (MQ=255)
                          gAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCTTAACGCCGATACCACATTCCATAc                                  <  1:3290823/68‑1 (MQ=255)
                          gAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCTTAACGCCGATACCACATTCCATAc                                  <  1:1438723/68‑1 (MQ=255)
                          gAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCTTAACGCCGATACCACATTCCATAc                                  <  1:2944544/68‑1 (MQ=255)
                          gAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCTTAACGCCGATACCACATTCCATAc                                  <  1:500818/68‑1 (MQ=255)
                          gAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCTTAACGCCGATACCACATTCCATAc                                  <  1:1954282/68‑1 (MQ=255)
                             tACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGtt                              >  1:726696/1‑69 (MQ=255)
                             tACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGtt                              >  1:674754/1‑69 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:2821197/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:2988528/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:2533130/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:3101921/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:2500775/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:3200294/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:332502/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:473822/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:530922/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:987725/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:1542625/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:2190876/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:1565232/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:2267395/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:1470454/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:1387818/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:1746754/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:178863/69‑1 (MQ=255)
                              aCTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:2000409/69‑1 (MQ=255)
                              aCTTCGATCACATCCCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:2393988/69‑1 (MQ=255)
                               cTTCGATCACATCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:2005307/68‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:569244/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:1368409/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:585841/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:3376367/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:60997/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:1039003/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:3346072/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:1456398/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:1027714/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:779542/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:935480/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:1470483/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:3092371/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:1607305/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:2494833/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:3002968/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:2169221/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:1751297/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:2097772/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:257881/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:1904166/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:1541/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:2722779/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:2600964/69‑1 (MQ=255)
                                       acaTCGCCAGTGCGGACATCGTTGTAGTTCATAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    <  1:2597297/69‑1 (MQ=255)
                                              cAGTGCGGACGTCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCGTTAACGt             <  1:3323029/69‑1 (MQ=255)
                                              cAGTGCGGACGTCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCGTTAACGt             <  1:1215079/69‑1 (MQ=255)
                                               aGTGCGGACATCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTa                             <  1:528803/52‑1 (MQ=255)
                                                        gtcgtTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCg                    >  1:686421/1‑52 (MQ=255)
                                                        gtcgtTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCGTTAACGTCATCTTTGaa   >  1:1190524/1‑69 (MQ=255)
                                                        gtcgtTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCGTTAACGTCATCTTTGaa   >  1:385864/1‑69 (MQ=255)
                                                        gtcgtTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCGTTAACGTCATCTTTGaa   >  1:3381265/1‑69 (MQ=255)
                                                        gtcgtTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCGTTAACGTCATCTTTGaa   >  1:1015522/1‑69 (MQ=255)
                                                        gtcgtTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCGTTAACGTCATCTTTGaa   >  1:1612422/1‑69 (MQ=255)
                                                        gtcgtTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCGTTAACGTCATCTTTGaa   >  1:982008/1‑69 (MQ=255)
                                                        gtcgtTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCGTTAACGTCATCTTTGaa   >  1:1011594/1‑69 (MQ=255)
                                                        gtcgtTTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCGTTAACGTCATCTTTGAAg  >  1:1618015/1‑69 (MQ=255)
                                                        |                                                                     
ATGGTACGTTGGATCTCGATGATTTCGAATACTTCGATCACATCGCCAGTGCGGACGTCGTTGTAGTTCTTAACGCCGATACCACATTCCATACCGTTACGGACTTCGTTAACGTCATCTTTGAAG  >  minE/2138442‑2138567

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: