| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,156,251 | A→G | 38.8% | G199G (GGT→GGC) | obgE ← | GTPase involved in cell partioning and DNA repair |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,156,251 | 0 | A | G | 38.8% | 39.8 / 57.2 | 86 | G199G (GGT→GGC) | obgE | GTPase involved in cell partioning and DNA repair |
| Reads supporting (aligned to +/- strand): ref base A (16/36); new base G (5/28); total (22/64) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.35e-01 | |||||||||||
CTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAGCCGCCGAT > minE/2156190‑2156311 | cTTCAATCAGTCCTGGAATATCGGCAACAACTAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:907634/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:989352/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:2635984/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:1021031/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:2547155/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:274520/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:2856289/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:2899295/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:2993030/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:2327630/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:231191/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:3094189/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:2210344/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:3155699/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:3345559/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:1792839/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:865809/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:1384228/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:676571/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:1453395/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:630354/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:819694/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:1615736/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:872768/69‑3 (MQ=255)cTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:1705367/69‑3 (MQ=255) ttCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:3273671/68‑3 (MQ=255) ttCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:1889374/68‑3 (MQ=255) cAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACtt > 1:2142843/1‑68 (MQ=255) cAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACtt > 1:356865/1‑68 (MQ=255) cAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACtt > 1:2265770/1‑68 (MQ=255) cAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACtt > 1:2602573/1‑68 (MQ=255) cAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATACGCACCACGCCCAggc < 1:155456/62‑3 (MQ=255) aGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:305077/59‑1 (MQ=255) aGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:911468/59‑1 (MQ=255) aGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:2727922/59‑1 (MQ=255) aGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:303559/59‑1 (MQ=255) aGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:3133292/59‑1 (MQ=255) aGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:611404/59‑1 (MQ=255) aGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:545682/59‑1 (MQ=255) aGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:3374726/59‑1 (MQ=255) aGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:3379263/59‑1 (MQ=255) aGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:1244361/59‑1 (MQ=255) aGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:26053/59‑1 (MQ=255) aGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:1785942/59‑1 (MQ=255) aGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:1387395/59‑1 (MQ=255) aGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:1337753/59‑1 (MQ=255) gTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAg < 1:917025/58‑1 (MQ=255) ccTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCaga > 1:1639483/1‑69 (MQ=255) ccTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCaga > 1:816121/1‑69 (MQ=255) ccTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCaga > 1:958964/1‑69 (MQ=255) ccTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCaga > 1:25460/1‑69 (MQ=255) tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACCCCCAGACTTGGCACCAGAGTGGTaac > 1:2602486/1‑67 (MQ=255) tCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTaaa > 1:2464763/1‑68 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACgg < 1:663575/69‑1 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACgg < 1:1693489/69‑1 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACgg < 1:48575/69‑1 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACgg < 1:418331/69‑1 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACgg < 1:417807/69‑1 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACgg < 1:3432368/69‑1 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACgg < 1:2384159/69‑1 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACgg < 1:1936310/69‑1 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACgg < 1:2237736/69‑1 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACg > 1:1975082/1‑68 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACg > 1:2835908/1‑68 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACg > 1:691022/1‑68 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACg > 1:403732/1‑68 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACg > 1:2122576/1‑68 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACg > 1:1492238/1‑68 (MQ=255) ggCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACAAGAGTGGTAAAc > 1:2841793/1‑67 (MQ=255) ttCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAgccgcc < 1:799166/68‑1 (MQ=255) ttCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAgccgcc < 1:1277059/68‑1 (MQ=255) ttCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAgccgcc < 1:568277/68‑1 (MQ=255) ttCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAgccgcc < 1:420399/68‑1 (MQ=255) ttCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAgccgcc < 1:1917043/68‑1 (MQ=255) ttCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAgccgcc < 1:3248516/68‑1 (MQ=255) ttCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAgccgcc < 1:3181769/68‑1 (MQ=255) ttCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAgccgcc < 1:2204772/68‑1 (MQ=255) ttCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAgccgcc < 1:2218965/68‑1 (MQ=255) ttCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAgccgcc < 1:3031280/68‑1 (MQ=255) ttCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAgccgcc < 1:2432815/68‑1 (MQ=255) ttCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAgccgcc < 1:1066648/68‑1 (MQ=255) cgcaCCACGCCCAGGCTTGGTACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAGCCGCCGAt > 1:1738991/4‑69 (MQ=255) cgcaCCACGCCCAGGCTTGGTACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAGCCGCCGAt > 1:1328421/4‑69 (MQ=255) cgcaCCACGCCCAGGCTTGGTACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAGCCGCCGAt > 1:1361819/4‑69 (MQ=255) cgcaCCACGCCCAGGCTTGGTACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAGCCGCCGAt > 1:231164/4‑69 (MQ=255) cgcaCCACGCCCAGGCTTGGTACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAGCCGCCGAt > 1:2652193/4‑69 (MQ=255) | CTTCAATCAGTCCTGGAATATCGGCAACAACGAAGCTCTTTTCGTTGTCCATTCGTACCACACCCAGACTTGGCACCAGAGTGGTAAACGGATAATCCGCCACTTTCGGTTTAGCCGCCGAT > minE/2156190‑2156311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |