Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 2,160,370 C→T 62.8% L406L (CTG→CTA murA ← UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,160,3700CT62.8% 25.7 / 29.7 51L406L (CTG→CTAmurAUDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase
Reads supporting (aligned to +/- strand):  ref base C (13/6);  new base T (5/27);  total (18/33)
Fisher's exact test for biased strand distribution p-value = 2.28e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01

CGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATAAATACGATCAACCA  >  minE/2160305‑2160425
                                                                 |                                                       
cGGGGCTGCCAGCTCTCAGACAATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGt                                                      <  1:1177839/69‑1 (MQ=255)
cGGGGCTGCCAGCTCTCAGACAATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGt                                                      <  1:716199/69‑1 (MQ=255)
cGGGGCTGCCAGCTCTCAGACAATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGt                                                      <  1:661908/69‑1 (MQ=255)
cGGGGCTGCCAGCTCTCAGACAATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGt                                                      <  1:1393731/69‑1 (MQ=255)
cGGGGCTGCCAGCTCTCAGACAATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGt                                                      <  1:1476594/69‑1 (MQ=255)
          aGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTc                                              <  1:1184451/67‑1 (MQ=255)
          aGCTCTCAGACAATTACTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGt                                                      <  1:1218481/59‑1 (MQ=38)
                 aGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGtt                                      >  1:904942/1‑68 (MQ=255)
                 aGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGtt                                      >  1:594983/1‑68 (MQ=255)
                 aGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGtt                                      >  1:313886/1‑68 (MQ=255)
                 aGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGtt                                      >  1:2843212/1‑68 (MQ=255)
                 aGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGtt                                      >  1:2528436/1‑68 (MQ=255)
                 aGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGtt                                      >  1:1798526/1‑68 (MQ=255)
                               cTTTCACACGCTGAATATTTGCACCTAAAGCGCGTTGTTTGTCTTCAATGCGTTCGTAg                                 <  1:2366518/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:1740061/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:1129829/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:783019/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:756418/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:1228294/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:1266045/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:65796/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:621891/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:372937/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:3426477/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:3377743/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:3346560/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:1313/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:2905264/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:2792112/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:2116426/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:1726231/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:2170123/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:1603522/59‑1 (MQ=255)
                               cTTTCACACGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAg                                 <  1:1753110/59‑1 (MQ=255)
                                      aggCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATa                >  1:1950984/3‑69 (MQ=255)
                                      acGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAGCCAcga                           >  1:586778/1‑58 (MQ=255)
                                      acGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGAt                 >  1:325759/1‑68 (MQ=255)
                                      acGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATa                >  1:3215025/1‑69 (MQ=255)
                                      acGCTCAATATTTGCACCTAAAGCGCGTAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATa                >  1:445283/1‑69 (MQ=255)
                                       cGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGAt                 >  1:3080418/1‑67 (MQ=255)
                                       cGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATa                >  1:2310671/1‑68 (MQ=255)
                                       cGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATa                >  1:1436672/1‑68 (MQ=255)
                                       cGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATa                >  1:1365179/1‑68 (MQ=255)
                                              tatTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAg                                 >  1:2329008/1‑44 (MQ=255)
                                                tttGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCAcgatc                         <  1:76345/50‑1 (MQ=255)
                                                tttGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCAcgatc                         <  1:2911120/50‑1 (MQ=255)
                                                tttGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCAcgatc                         <  1:1827222/50‑1 (MQ=255)
                                                tttGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCAcgatc                         <  1:1301629/50‑1 (MQ=255)
                                                tttGCACCTAAAGCGCCCAGTTTGTCTTCAATGCGTTCGTAGCCAcgatc                         <  1:528484/50‑1 (MQ=255)
                                                    cACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATAAATACGATCAacca  >  1:57647/1‑69 (MQ=255)
                                                    cACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATAAATACGATCAacca  >  1:2344505/1‑69 (MQ=255)
                                                                 |                                                       
CGGGGCTGCCAGCTCTCAGACGATTATTCGCCTTTCACACGCTCAATATTTGCACCTAAAGCGCGCAGTTTGTCTTCAATGCGTTCGTAGCCACGATCGATGTGATAAATACGATCAACCA  >  minE/2160305‑2160425

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: