Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 2,277,555 | T→C | 26.2% | E398E (GAA→GAG) | btuB ← | vitamin B12/cobalamin outer membrane transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 2,277,555 | 0 | T | C | 26.2% | 60.8 / 19.9 | 57 | E398E (GAA→GAG) | btuB | vitamin B12/cobalamin outer membrane transporter |
Reads supporting (aligned to +/- strand): ref base T (14/28); new base C (4/11); total (18/39) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.53e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCCCCAGATTTGGTGCCTTATAAGATGTCCCGTAGGAAGCAATGAAGCGATAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGTC > minE/2277491‑2277611 | gCCCCAGATTTGGTGCCTTATAAGATGTCCCGTAGGAAGCAATGAAGCGATAACCTTCGATGAATTccc < 1:1478500/69‑1 (MQ=255) cccAGATTTGGTGCCTTATAAGATGTCCCGTAGGAAGCAATGAAGCGATAACCTTCGATGAATTCCCa < 1:3296656/68‑1 (MQ=255) cccAGATTTGGTGCCTTATAAGATGTCCCGTAGGAAGCAATGAAGCGATAACCTTCGATGAATTCCCa < 1:2651555/68‑1 (MQ=255) cccAGATTTGGTGCCTTATAAGATGTCCCGTAGGAAGCAATGAAGCGATAACCTTCGATGAATTCCCa < 1:2339538/68‑1 (MQ=255) cccAGATTTGGTGCCTTATAAGATGTCCCGTAGGAAGCAATGAAGCGATAACCTTCGATGAATTCCCa < 1:858752/68‑1 (MQ=255) aaGATTTGGTGCCTTATAAGATGTTCCGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAAcc > 1:298350/2‑69 (MQ=255) aaGATTTGGTGCCTTATAAGATGTTCCGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAAcc > 1:1842369/2‑69 (MQ=255) aaGATTTGGTGCCTTATAAGATGTTCCGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAAcc > 1:2737387/2‑69 (MQ=255) aaGATTTGGTGCCTTATAAGATGTTCCGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAAc > 1:370574/2‑68 (MQ=255) ttGGTGCCTTATAAGATGTCCCGTAGGAAGCAATGAAGCGATAACCTTCGATGAATTCCCAACCGgcgc > 1:2459959/1‑69 (MQ=255) aTGTCCCGTAGGAAGCAATGAAGCGATAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTc > 1:1599941/1‑69 (MQ=255) aTGTCCCGTAGGAAGCAATGAAGCGATAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTc > 1:2550440/1‑69 (MQ=255) aTGTCCCGTAGGAAGCAATGAAGCGATAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTc > 1:60552/1‑69 (MQ=255) aTGTCCCGTAGGAAGCAATGAAGCGATAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTc > 1:558927/1‑69 (MQ=255) aTGTCCCGTAGGAAGCAATGAAGCGATAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTc > 1:2251240/1‑69 (MQ=255) aTGTCCCGTAGGAAGCAATGAAGCGATAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTc > 1:2179826/1‑69 (MQ=255) gttccGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAACCGGCGCTGGTTTGc < 1:2551495/57‑1 (MQ=255) gttccGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAACCGGCGCTGGTTTGc < 1:902010/57‑1 (MQ=255) gttccGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAACCGGCGCTGGTTTGc < 1:2958202/57‑1 (MQ=255) gttccGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAACCGGCGCTGGTTTGc < 1:2607605/57‑1 (MQ=255) gttccGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAACCGGCGCTGGTTTGc < 1:307051/57‑1 (MQ=255) gttccGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAACCGGCGCTGGTTTGc < 1:2993824/57‑1 (MQ=255) gttccGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAACCGGCGCTGGTTTGc < 1:1829107/57‑1 (MQ=255) gttccGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAACCGGCGCTGGTTTGc < 1:1797997/57‑1 (MQ=255) gttccGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAACCGGCGCTGGTTTGc < 1:637438/57‑1 (MQ=255) gttccGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAACCGGCGCTGGTTTGc < 1:1599714/57‑1 (MQ=255) gttccGTAGGAAGCAATAAAGCGATAACCTTCGATGAACTCCCAACCAGCGCTGGTTTGc < 1:15644/57‑1 (MQ=255) tCCCGTAGGAAGCAATGAAGCGATAACCTTCGATTAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCAt < 1:657398/69‑1 (MQ=255) aGCAATGAAGCGATAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTc < 1:1337766/56‑1 (MQ=255) aGCAATGAAGCGATAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTc < 1:218826/56‑1 (MQ=255) aGCAATGAAGCGATAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTc < 1:502965/56‑1 (MQ=255) aGCAATGAAGCGATAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTc < 1:1135569/56‑1 (MQ=255) gCGATAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGtt < 1:1156755/69‑1 (MQ=255) gCGATAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGtt < 1:2910390/69‑1 (MQ=255) aTAACCTTCGATGAATTCCCAACCGGCTCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATc > 1:1156907/1‑69 (MQ=255) aTAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGtt < 1:1718846/66‑1 (MQ=255) aTAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATc < 1:2015337/69‑1 (MQ=255) aTAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATc > 1:2518156/1‑69 (MQ=255) taCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt < 1:175132/68‑1 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt < 1:176609/69‑1 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt < 1:96220/69‑1 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt > 1:1208041/1‑69 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt < 1:747021/69‑1 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt < 1:163970/69‑1 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt < 1:1692704/69‑1 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt > 1:636213/1‑69 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt < 1:515162/69‑1 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt < 1:49696/69‑1 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt < 1:376700/69‑1 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt < 1:1822995/69‑1 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt < 1:3136614/69‑1 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt < 1:189982/69‑1 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt < 1:2272650/69‑1 (MQ=255) aaCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGt < 1:2322560/69‑1 (MQ=255) aCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGTc > 1:1841791/1‑69 (MQ=255) aCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGTc > 1:807695/1‑69 (MQ=255) aCCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGTc > 1:2017643/1‑69 (MQ=255) | GCCCCAGATTTGGTGCCTTATAAGATGTCCCGTAGGAAGCAATGAAGCGATAACCTTCGATGAATTCCCAACCGGCGCTGGTTTGCCAGGTTCCATGACGACCAAACTGTGAGTTATCGTC > minE/2277491‑2277611 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |