| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,277,619 | G→C | 23.8% | A377G (GCA→GGA) | btuB ← | vitamin B12/cobalamin outer membrane transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,277,619 | 0 | G | C | 23.8% | 84.8 / 24.6 | 55 | A377G (GCA→GGA) | btuB | vitamin B12/cobalamin outer membrane transporter |
| Reads supporting (aligned to +/- strand): ref base G (30/11); new base C (7/6); total (38/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTCCATGACGACCAAACTGTGAGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGCCGGTATTACG > minE/2277581‑2277683 | ttCCATGACGACCAAACTGTGAGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACtt < 1:835398/69‑1 (MQ=255) tCCATGACGACCAAACTGTGAGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACttg > 1:1716949/1‑69 (MQ=255) tCCATGACGACCAAACTGTGAGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACtt < 1:361020/68‑1 (MQ=255) acgacCAAACTGTGAGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAg > 1:2220327/1‑69 (MQ=255) cgacCAAACTGAGAATTATCGTCGCTGCGTCCTGCGCCTTCAAAAGTAAAATCGCCGACTTGCTGCAg > 1:1140641/1‑68 (MQ=255) cgacCAAACTGAGAATTATCGTCGCTGCGTCCTGCGCCTTCAAAAGTAAAATCGCCGACTTGCTGCAg > 1:2652026/1‑68 (MQ=255) cgacCAAACTGAGAATTATCGTCGCTGCGTCCTGCGCCTTCAAAAGTAAAATCGCCGACTTGCTGCAg > 1:358266/1‑68 (MQ=255) cgacCAAACTGAGAATTATCGTCGCTGCGTCCTGCGCCTTCAAAAGTAAAATCGCCGACTTGCTGCAg > 1:442789/1‑68 (MQ=255) cgacCAAACTGAGAATTATCGTCGCTGCGTCCTGCGCCTTCAAAAGTAAAATCGCCGACTTGCTGCAg > 1:1898742/1‑68 (MQ=255) cgacCAAACTGAGAATTATCGTCGCTGCGTCCTGCGCCTTCAAAAGTAAAATCGCCGACTCGCTGCAg > 1:387305/1‑68 (MQ=255) cgacCAAACTGAGAATTATCGTCGCAGCGTCCTGCGCCTTCAAAAGTAAAATCGCCGACTTGCTGCAg > 1:861381/1‑68 (MQ=255) aCTGTGAGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCa < 1:323795/69‑1 (MQ=255) aCTGTGAGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCa < 1:1543739/69‑1 (MQ=255) aCTGTGAGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCa < 1:416026/69‑1 (MQ=255) tgtgAGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCaga < 1:1835946/69‑1 (MQ=255) tgtgAGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCaga < 1:3300946/69‑1 (MQ=255) tgtgAGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCaga < 1:1669890/69‑1 (MQ=255) aGTTATCGTCACTGCTTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCagata < 1:2651043/67‑1 (MQ=255) aGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCagataga > 1:2376560/1‑69 (MQ=255) aGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCagataga > 1:1108553/1‑69 (MQ=255) aGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCagata < 1:2777580/67‑1 (MQ=255) attATCGTCGCTGCGTCCTGCGCCTTCAAAAGTAAAATCGCCGACTTGCTGCAGCCCAGTCagatagat < 1:1826605/68‑1 (MQ=255) attATCGTCGCTGCGTCCTGCGCCTTCAAAAGTAAAATCGCCGACTTGCTGCAGCCCAGTCagatagat < 1:1990297/68‑1 (MQ=255) attATCGTCGCTGCGTCCTGCGCCTTCAAAAGTAAAATCGCCGACTTGCTGCAGCCCAGTCagatagat < 1:1994254/68‑1 (MQ=255) attATCGTCGCTGCGTCCTGCGCCTTCAAAAGTAAAATCGCCGACTTGCTGCAGCCCAGTCagatagat < 1:448117/68‑1 (MQ=255) attATCGTCGCTGCGTCCTGCGCCTTCAAAAGTAAAATCGCCGACTTGCTGCAGCCCAGTCagatagat < 1:2314032/68‑1 (MQ=255) attATCGTCGCTGCGTCCTGCGCCTTCAAAAGTAAAATCGCCGACTTGCTGCAGCCCAGTCagatagat < 1:1743977/68‑1 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTTAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGcc > 1:1224645/1‑69 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCa > 1:1307019/1‑59 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCa > 1:2820658/1‑59 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCa > 1:2971345/1‑59 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCa > 1:331614/1‑59 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCa > 1:3329377/1‑59 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCa > 1:1497401/1‑59 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATGGATGcc > 1:1805626/1‑69 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGcc > 1:447381/1‑69 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGcc > 1:385943/1‑69 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGcc > 1:963159/1‑69 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGcc > 1:2783055/1‑69 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGcc > 1:2764923/1‑69 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGcc > 1:1087534/1‑69 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGcc > 1:2651802/1‑69 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGcc > 1:2566580/1‑69 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGcc > 1:2409963/1‑69 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGcc > 1:1765728/1‑69 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGcc > 1:1287081/1‑69 (MQ=255) aTCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGcc > 1:1364270/1‑69 (MQ=255) aTCGTCACTGCGTACTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGcc > 1:28792/1‑69 (MQ=255) gTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGCCgg < 1:1088309/68‑1 (MQ=255) gTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGCCGGt > 1:1008764/1‑69 (MQ=255) gTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGCCGGt > 1:59919/1‑69 (MQ=255) gTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGCCGGt > 1:2039455/1‑69 (MQ=255) gTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGCCGGt > 1:2892193/1‑69 (MQ=255) cGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGCCGGTATTACg > 1:501596/1‑68 (MQ=255) cGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGCCGGTATTACg > 1:671523/1‑68 (MQ=255) tgctgcGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCTGTCagataga > 1:1042312/1‑53 (MQ=255) tgctgcGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCagataga > 1:2663400/1‑53 (MQ=255) tgctgcGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCagatag > 1:2695397/1‑52 (MQ=255) tgctgcGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCaga > 1:1720942/1‑49 (MQ=255) | TTCCATGACGACCAAACTGTGAGTTATCGTCACTGCGTGCTGCGCCTTCAAAGGTAAAATCGCCGACTTGTTGCAGCCCGGTCAGATAGATGCCGGTATTACG > minE/2277581‑2277683 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |