| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,278,440 | T→G | 41.9% | V103V (GTA→GTC) | btuB ← | vitamin B12/cobalamin outer membrane transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,278,440 | 0 | T | G | 41.9% | 18.2 / 76.2 | 74 | V103V (GTA→GTC) | btuB | vitamin B12/cobalamin outer membrane transporter |
| Reads supporting (aligned to +/- strand): ref base T (36/7); new base G (17/14); total (53/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.14e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.32e-01 | |||||||||||
CTGGACAAGCGCAATAGGGAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATAAAAATAG > minE/2278374‑2278495 | cTGGACAAGCGCAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGAc > 1:2340097/1‑69 (MQ=255)cTGGACAAGCGCAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGAc > 1:2450457/1‑69 (MQ=255)cTGGACAAGCGCAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGAc > 1:1905095/1‑69 (MQ=255)cTGGACAAGCGCAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGAc > 1:575522/1‑69 (MQ=255)cTGGACAAGCGCAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGAc > 1:267662/1‑69 (MQ=255)cTGGACAAGCGCAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGAc > 1:3351368/1‑69 (MQ=255)cTGGACAAGCGCAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGAc > 1:3263562/1‑69 (MQ=255)cTGGACAAGCGCAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGAc > 1:1697370/1‑69 (MQ=255)cTGGACAAGCGCAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGAc > 1:3236452/1‑69 (MQ=255) cgcAATAGGGAACTGTCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCaa > 1:1126375/1‑68 (MQ=255) cgcAATAGGGAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCaa > 1:962531/1‑68 (MQ=255) cgcAATAGGGAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCaa > 1:1087193/1‑68 (MQ=255) cgcAATAGGGAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCaa > 1:2484857/1‑68 (MQ=255) cgcAATAGGGAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCaa > 1:2746433/1‑68 (MQ=255) cgcAATAGGGAACTGCCTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGACGCCAt > 1:3236659/1‑65 (MQ=255) cgcAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGACGCCATCaa > 1:41625/1‑68 (MQ=255) cgcAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGACGCCATCaa > 1:1732736/1‑68 (MQ=255) cgcAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGACGCCATCaa > 1:2509478/1‑68 (MQ=255) cgcAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGACGCCATCaa > 1:1778857/1‑68 (MQ=255) cgcAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGACGCCATCaa > 1:1878934/1‑68 (MQ=255) cgcAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGACGCCATCaa > 1:2387653/1‑68 (MQ=255) cgcAATAGGGAACTGACTAAGATCAGCAGAACCACTCACCCCCGCCAAATTCAGGCGGACGCCATCaa > 1:1908508/1‑68 (MQ=255) aaTAGGGAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTaa < 1:2267532/69‑1 (MQ=255) gtgAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:1396892/3‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGc > 1:2449884/1‑55 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCaaat > 1:1933855/1‑61 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAAtt > 1:2439129/1‑63 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAAtt > 1:1196357/1‑63 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAAtt > 1:1941097/1‑63 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAAtt > 1:765186/1‑63 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAAtt > 1:1874111/1‑63 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAAtt > 1:2690333/1‑63 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAAtt > 1:3034357/1‑63 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAacac > 1:3087180/1‑68 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAaca > 1:1147402/1‑67 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:312474/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:2281550/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:660882/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:2625955/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:3072583/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:2308404/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:1475264/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:1655858/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:1692203/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:145630/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:1427925/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:1899359/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:2176952/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:227042/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:1117434/1‑69 (MQ=255) gggAACTGGCTAAGGTCGGCAGAACCACTCACCACCGCCAGATTCAGGCGTACGCCATCAATTAACAcc > 1:727746/1‑69 (MQ=255) aCTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACACCAaca < 1:1625952/69‑1 (MQ=255) gTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACACCAACACATGACTGGc > 1:2198532/1‑69 (MQ=255) gTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACACCAACACATGACTGGc > 1:1473256/1‑69 (MQ=255) cAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACACCAACACATGACTGGCATTTg < 1:2657703/69‑1 (MQ=255) aCCCCCGCCAGATTCAGGCGTACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAAt > 1:62894/1‑68 (MQ=255) ccGCCAAATTCAGGCGGACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATaaaaa < 1:1298129/69‑1 (MQ=255) ccGCCAAATTCAGGCGGACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATaaaaa < 1:1344724/69‑1 (MQ=255) ccGCCAAATTCAGGCGGACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATaaaaa < 1:1418288/69‑1 (MQ=255) ccGCCAAATTCAGGCGGACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATaaaaa < 1:739045/69‑1 (MQ=255) ccGCCAAATTCAGGCGGACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATaaaaa < 1:1115028/69‑1 (MQ=255) ccGCCAAATTCAGGCGGACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATaaaaa < 1:2981969/69‑1 (MQ=255) ccGCCAAATTCAGGCGGACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATaaaaa < 1:1738159/69‑1 (MQ=255) ccGCCAAATTCAGGCGGACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATaaaaa < 1:1775335/69‑1 (MQ=255) ccGCCAAATTCAGGCGGACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATaaaaa < 1:2577875/69‑1 (MQ=255) ccGCCAAATTCAGGCGGACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATaaaaa < 1:246808/69‑1 (MQ=255) ccGCCAAATTCAGGCGGACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATaaaaa < 1:228064/69‑1 (MQ=255) ccGCCAAATTCAGGCGGACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATaaaaa < 1:2428266/69‑1 (MQ=255) ccGCCAAATTCAGGCGGACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATaaaaa < 1:2427410/69‑1 (MQ=255) ccGCCAAATTCAGGCGGACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATaaaaa < 1:2424262/69‑1 (MQ=255) ccAGATTCAGGCGTACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATAAAAATAg < 1:1520356/69‑1 (MQ=255) ccAGATTCAGGCGTACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATAAAAATAg < 1:1710064/69‑1 (MQ=255) ccAGATTCAGGCGTACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATAAAAATAg < 1:218153/69‑1 (MQ=255) ccAGATTCAGGCGTACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATAAAAATAg < 1:934990/69‑1 (MQ=255) | CTGGACAAGCGCAATAGGGAACTGGCTAAGGTCGGCAGAACCACTCACCCCCGCCAGATTCAGGCGTACGCCATCAATTAACACCAACACATGACTGGCATTTGTACCGCGAATAAAAATAG > minE/2278374‑2278495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |