| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,287,830 | A→G | 41.6% | T97T (ACA→ACG) | argE → | acetylornithine deacetylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,287,830 | 0 | A | G | 41.6% | 41.8 / 90.6 | 120 | T97T (ACA→ACG) | argE | acetylornithine deacetylase |
| Reads supporting (aligned to +/- strand): ref base A (35/35); new base G (30/20); total (65/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
Only 100 of 120 total aligned reads displayed.
GGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGTT > minE/2287774‑2287895 | gggCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCAt < 1:2116588/69‑1 (MQ=255)gggCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCAt < 1:3257407/69‑1 (MQ=255) aTACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAg < 1:96267/62‑1 (MQ=255) ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:1939200/1‑69 (MQ=255) ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:389125/1‑69 (MQ=255) ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:3394808/1‑69 (MQ=255) ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:2314431/1‑69 (MQ=255) ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:795270/1‑69 (MQ=255) ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:2657080/1‑69 (MQ=255) ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:770817/1‑69 (MQ=255) ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:290533/1‑69 (MQ=255) ccGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCa > 1:2786214/1‑69 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:2995223/69‑1 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:2009935/69‑1 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:967607/69‑1 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:2162786/69‑1 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:271395/69‑1 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:3042362/69‑1 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:3298319/69‑1 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:368109/69‑1 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:559167/69‑1 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:658918/69‑1 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:710851/69‑1 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1100472/69‑1 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1210523/69‑1 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1297888/69‑1 (MQ=255) aCGGTGCCATTTGATGACGGACGCTGGACGCGCGATCCATTTACGTTGAAGGAGCATGACGGCAAGCtt < 1:2093092/69‑1 (MQ=255) ggTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCAt < 1:3288302/55‑1 (MQ=255) gCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAg > 1:1234201/1‑49 (MQ=255) gCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAg > 1:2486725/1‑49 (MQ=255) gCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAg > 1:2776493/1‑49 (MQ=255) ccATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGc < 1:2464681/69‑1 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAg > 1:816020/1‑44 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:2829201/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:507753/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:499361/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:3196043/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:507934/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:2688668/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:533846/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:2501953/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1235976/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:3319377/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:2476565/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1022743/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:635958/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1709977/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1049989/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1710545/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:1778256/1‑68 (MQ=255) ttGATGACGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTa > 1:2102945/1‑68 (MQ=255) tgatgaCGGTCGCTGGCCGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:337147/1‑69 (MQ=255) tgatgaCGGTCGCTGGACGCGCGATCGGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:1644540/1‑69 (MQ=255) tgatgaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAGGCTTTACGGCTTAgg > 1:1960267/1‑69 (MQ=255) tgatgaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:3033238/1‑69 (MQ=255) tgatgaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:862529/1‑69 (MQ=255) tgatgaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAgg > 1:1388528/1‑69 (MQ=255) gatgaCGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1251860/57‑1 (MQ=255) gaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAcc < 1:3336398/69‑1 (MQ=255) gaCGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAcc < 1:2224640/69‑1 (MQ=255) cGGACGCTGGCCGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:602110/1‑68 (MQ=255) cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:1107842/1‑68 (MQ=255) cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:3077656/1‑68 (MQ=255) cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:1816432/1‑68 (MQ=255) cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:1664908/1‑68 (MQ=255) cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:1271417/1‑68 (MQ=255) cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:2367339/1‑68 (MQ=255) cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:2585773/1‑68 (MQ=255) cGGACGCTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCAccg > 1:703527/1‑68 (MQ=255) tCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGa < 1:1804441/69‑1 (MQ=255) cTGGACGCGCGATCCATTTACGTTGACGGAGCATGACGGCAAGCtt < 1:1070510/46‑1 (MQ=255) tGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATg < 1:1372866/69‑1 (MQ=255) tGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATg < 1:773036/69‑1 (MQ=255) tGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATg < 1:1583236/69‑1 (MQ=255) tGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATg < 1:1104770/69‑1 (MQ=255) cgcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATTAAAGGc < 1:1450628/69‑1 (MQ=255) cgcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:2889732/69‑1 (MQ=255) cgcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:1239639/69‑1 (MQ=255) cgcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:2074862/69‑1 (MQ=255) cgcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:232092/69‑1 (MQ=255) cgcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:2765179/69‑1 (MQ=255) cgcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:2977992/69‑1 (MQ=255) gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:2677160/68‑1 (MQ=255) gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:2673158/68‑1 (MQ=255) gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:2276782/68‑1 (MQ=255) gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:932949/68‑1 (MQ=255) gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGc < 1:900709/68‑1 (MQ=255) gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCt < 1:3121518/69‑1 (MQ=255) gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCt < 1:1983589/69‑1 (MQ=255) gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCt < 1:1992074/69‑1 (MQ=255) gcgATCCGTTTACACTGACGGAGCATGACGGCAAGCTGTACGGCTTAGGCACCGCCGa < 1:1088301/58‑1 (MQ=255) gATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCttt < 1:1510214/69‑1 (MQ=255) gATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCttt < 1:1622201/69‑1 (MQ=255) tACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCttt > 1:2675911/1‑61 (MQ=255) tACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCgct > 1:2801907/1‑67 (MQ=255) tACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGtt > 1:1685836/1‑69 (MQ=255) tACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGtt > 1:1059002/1‑69 (MQ=255) tACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGtt > 1:746843/1‑69 (MQ=255) tACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGtt > 1:1475408/1‑69 (MQ=255) tACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGtt > 1:380282/1‑69 (MQ=255) | GGGCATACCGATACGGTGCCATTTGATGACGGTCGCTGGACGCGCGATCCGTTTACACTGACGGAGCATGACGGCAAGCTTTACGGCTTAGGCACCGCCGACATGAAAGGCTTTTTTGCGTT > minE/2287774‑2287895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |