Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 2,298,777 | G→T | 40.5% | R171R (CGC→CGA) | metF ← | 5,10‑methylenetetrahydrofolate reductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 2,298,777 | 0 | G | T | 40.5% | 22.6 / 28.8 | 37 | R171R (CGC→CGA) | metF | 5,10‑methylenetetrahydrofolate reductase |
Reads supporting (aligned to +/- strand): ref base G (15/7); new base T (5/10); total (20/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.98e-02 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCGACATCGAAGAAGAACTGAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCTTTTTGCTTCCGGGTGAACTTCCGGATACGC > minE/2298724‑2298839 | tCGACATCGAAGAAGAACTGAGTAATGGCGCGGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAg > 1:918890/1‑68 (MQ=255) tCGACATCGAAGAAGAACTGAGTAATGGCGCGGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAg > 1:2795630/1‑68 (MQ=255) tCGACATCGAAGAAGAACTGAGTAATGGCGCGGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAg > 1:1415470/1‑68 (MQ=255) tCGACATCGAAGAAGAACTGAGTAATGGCGCGGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAg > 1:1424857/1‑68 (MQ=255) tCGACATCGAAGAAGAACTGAGTAATGGCGCGGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAg > 1:1621915/1‑68 (MQ=255) cTGAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCt > 1:1081488/1‑69 (MQ=255) cTGAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCt > 1:868425/1‑69 (MQ=255) cTGAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCt > 1:2909590/1‑69 (MQ=255) cTGAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCt > 1:2516599/1‑69 (MQ=255) cTGAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCt > 1:2348330/1‑69 (MQ=255) cTGAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCt > 1:1900685/1‑69 (MQ=255) cTGAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCt < 1:1806242/69‑1 (MQ=255) cTGAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCt > 1:1047157/1‑69 (MQ=255) cTGAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCt > 1:1569972/1‑69 (MQ=255) cTGAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGACTGAGCGCt > 1:1213463/1‑69 (MQ=255) gAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCttt > 1:2767563/1‑69 (MQ=255) gAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCttt > 1:3226356/1‑69 (MQ=255) gAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCttt > 1:3148501/1‑69 (MQ=255) gAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCttt > 1:2107294/1‑69 (MQ=255) ggcgcgGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAGTAAATCGGCCTGGGCACTTTTCGCTTc < 1:1631364/68‑1 (MQ=255) ggcgcgGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAGTAAATCGGCCTGGGCACTTTTCGCTTc < 1:1889088/68‑1 (MQ=255) ggcgcgGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAGTAAATCGGCCTGGGCACTTTTCGCTTc < 1:3318847/68‑1 (MQ=255) ggcgcgGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAGTAAATCGGCCTGGGCACTTTTCGCTTc < 1:1639675/68‑1 (MQ=255) ggcgcgGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAGTAAATCGGCCTGGGCACTTTTCGCTTc < 1:1989293/68‑1 (MQ=255) ggcgcgGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAGTAAATCGGCCTGGGCACTTTTCGCTTc < 1:3104833/68‑1 (MQ=255) ggcgcgGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAGTAAATCGGCCTGGGCACTTTTCGCTTc < 1:2086624/68‑1 (MQ=255) ggcgcgGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAGTAAATCGGCCTGGGCACTTTTCGCTTc < 1:2783955/68‑1 (MQ=255) ggcgcgGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAGTAAATCGGCCTGGGCACTTTTCGCTTc < 1:177740/68‑1 (MQ=255) ggcgcgGTTGGCTCCGGCATCCACTTTTCGTCTCAGGTTGAGTAAATCGGCCTGGGCACTTTTCGCTTc < 1:2202705/68‑1 (MQ=255) ttGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCTTTTTGCTTCCGGGTGa < 1:1289613/69‑1 (MQ=255) tGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCTTTTTGCTTCCGGGTGa < 1:2375722/68‑1 (MQ=255) gCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCTTTTTGCTTCCGGGTGAACTTCCGGa < 1:2720106/69‑1 (MQ=255) gCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCTTTTTGCTTCCGGGTGAACTTCCGGa < 1:236746/69‑1 (MQ=255) gCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCTTTTTGCTTCCGGGTGAACTTCCGGa < 1:439144/69‑1 (MQ=255) aTCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCTTTTTGCTTCCGGGTGAACTTCCGGa < 1:525237/67‑1 (MQ=255) cACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCTTTTTGCTTCCGGGTGAACTTCCGGATAcgc > 1:2820335/1‑69 (MQ=255) cACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCTTTTTGCTTCCGGGTGAACTTCCGGATAcgc > 1:1201815/1‑69 (MQ=255) | TCGACATCGAAGAAGAACTGAGTAATCGCGCGGTTGGCTCCGGCATCCACTTTGCGTTTCAGATTAAGCAAATCCGCCTGAGCGCTTTTTGCTTCCGGGTGAACTTCCGGATACGC > minE/2298724‑2298839 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |