| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,301,360 | A→G | 37.5% | S237S (AGT→AGC) | metL ← | fused aspartokinase II and homoserine dehydrogenase II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,301,360 | 0 | A | G | 37.5% | 31.6 / 40.0 | 64 | S237S (AGT→AGC) | metL | fused aspartokinase II and homoserine dehydrogenase II |
| Reads supporting (aligned to +/- strand): ref base A (18/22); new base G (14/10); total (32/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.28e-01 | |||||||||||
TCGCTGGCCTCATCCAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCGAGAAACACCCGCCAGCGCACCGATTTGT > minE/2301295‑2301426 | tCGCTGGCCTCATCCAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTg < 1:3245799/69‑1 (MQ=255)tCGCTGGCCTCATCCAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTg < 1:2030712/69‑1 (MQ=255)tCGCTGGCCTCATCCAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTg < 1:1575875/69‑1 (MQ=255)tCGCTGGCCTCATCCAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTg < 1:131666/69‑1 (MQ=255) cTGGCCTCATCCAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTGta < 1:618804/68‑1 (MQ=255) ttCATCCAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCGCTATATAcccc > 1:1790432/2‑69 (MQ=255) ttCATCCAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCGCTATATAcccc > 1:1120486/2‑69 (MQ=255) ttCATCCAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCGCTATATAcccc > 1:171681/2‑69 (MQ=255) ttCATCCAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCGCTATATAcccc > 1:3055827/2‑69 (MQ=255) ttCATCCAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCGCTATATAcccc > 1:28218/2‑69 (MQ=255) ccAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTg < 1:2662726/56‑1 (MQ=255) ccAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTg < 1:2828466/56‑1 (MQ=255) ccAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTg < 1:3371694/56‑1 (MQ=255) ccAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTg < 1:276454/56‑1 (MQ=255) ccAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTg < 1:1883804/56‑1 (MQ=255) ccAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTg < 1:678141/56‑1 (MQ=255) ccAGACGCAGCAACGGCAGAAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTg < 1:3291266/56‑1 (MQ=255) aGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTg < 1:3066877/54‑1 (MQ=255) caACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTg < 1:880994/46‑1 (MQ=255) aaCGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAg > 1:1409557/1‑69 (MQ=255) aaCGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAg > 1:1946340/1‑69 (MQ=255) aaCGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAg > 1:2897768/1‑69 (MQ=255) aaCGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAg > 1:1544740/1‑69 (MQ=255) aaCGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAg > 1:560808/1‑69 (MQ=255) aaCGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAg > 1:1322447/1‑69 (MQ=255) aaCGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAg > 1:1310821/1‑69 (MQ=255) aaCGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAg > 1:1284631/1‑69 (MQ=255) aaCGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAg > 1:905144/1‑69 (MQ=255) aTCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCgaga < 1:3316026/66‑1 (MQ=255) aTCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCgaga < 1:2560977/66‑1 (MQ=255) aTCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCgaga < 1:2433075/66‑1 (MQ=255) aTCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCgaga < 1:2056318/66‑1 (MQ=255) aTCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCgaga < 1:368714/66‑1 (MQ=255) aTCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCgaga < 1:114602/66‑1 (MQ=255) aTCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCgaga < 1:1474981/66‑1 (MQ=255) tttCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCGAGAAACAcc > 1:2671538/1‑69 (MQ=255) tttCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCGAGAAACAcc > 1:1249806/1‑69 (MQ=255) cgGGTCGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCAcc > 1:2403478/1‑69 (MQ=255) cgGGTCGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCAcc > 1:1037018/1‑69 (MQ=255) cgGGTCGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCAcc > 1:1081267/1‑69 (MQ=255) cgGGTCGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCAcc > 1:316225/1‑69 (MQ=255) cgGGTCGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCAcc > 1:2862053/1‑69 (MQ=255) cgGGTCGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCAcc > 1:1806371/1‑69 (MQ=255) cgGGTCGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCAcc > 1:1876609/1‑69 (MQ=255) cgGGTCGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCAcc > 1:2537776/1‑69 (MQ=255) cgGGTCGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCAcc > 1:2293764/1‑69 (MQ=255) cGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCACCGAttt < 1:555310/69‑1 (MQ=255) cGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCACCGAttt < 1:471174/69‑1 (MQ=255) cGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCACCGAttt < 1:363356/69‑1 (MQ=255) cGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCACCGAttt < 1:960774/69‑1 (MQ=255) cGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCACCGAttt < 1:1395086/69‑1 (MQ=255) cGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCACCGAttt < 1:1357382/69‑1 (MQ=255) cGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCACCGAttt < 1:1139438/69‑1 (MQ=255) cGGCGCTATATACCCCGGCGACGTCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCACCGAttt < 1:1132467/69‑1 (MQ=255) cGGCGCTATATACCCCGGCGACGCCACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCACCGAttt < 1:1820038/69‑1 (MQ=255) ggCGCTATATACCCCGGCGACGTAACTCCAAATGGTTACGCGAGAAACACCCGCCAGCGCACCGAttt < 1:2964449/68‑1 (MQ=255) ggCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCgaga < 1:3430247/45‑1 (MQ=255) ggCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCGAGAAACACCCGCCAGCGCACCGAttt > 1:1247251/1‑68 (MQ=255) ggCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCGAGAAACACCCGCCAGCGCACCGATTtg > 1:2311460/1‑69 (MQ=255) ggCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCGAGAAACACCCGCCAGCGCACCGATTtg > 1:1886709/1‑69 (MQ=255) ggCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCGAGAAACACCCGCCAGCGCACCGATTtg > 1:1790112/1‑69 (MQ=255) ggCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCGAGAAACACCCGCCAGCGCACCGATTtg > 1:613260/1‑69 (MQ=255) ggCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCGAGAAACACCCGCCAGCGCACCGATTtg > 1:1062728/1‑69 (MQ=255) ggCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCGAGAAACACCC‑CCAGCGCACCGATTtgt > 1:773366/1‑69 (MQ=255) | TCGCTGGCCTCATCCAGACGCAGCAACGGCAGCAGGCAGGCATCTTTCACTTTACGCGGGTCGGCACTGTATACCCCGGCGACGTCGCTCCAGATGGTTACGCGAGAAACACCCGCCAGCGCACCGATTTGT > minE/2301295‑2301426 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |