| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,302,610 | G→T | 55.0% | A208A (GCC→GCA) | metB ← | cystathionine gamma‑synthase, PLP‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,302,610 | 0 | G | T | 55.0% | 5.7 / 91.6 | 80 | A208A (GCC→GCA) | metB | cystathionine gamma‑synthase, PLP‑dependent |
| Reads supporting (aligned to +/- strand): ref base G (18/18); new base T (29/15); total (47/33) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.76e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.37e-01 | |||||||||||
ACGCCAATATTGTTTGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCT > minE/2302542‑2302673 | aCGCCAATATTGTTTGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCg > 1:2887750/1‑69 (MQ=255)aCGCCAATATTGTTTGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCg > 1:2806983/1‑69 (MQ=255)aCGCCAATATTGTTTGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCg > 1:1762133/1‑69 (MQ=255)aCGCCAATATTGTTTGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCg > 1:2298690/1‑69 (MQ=255) gCCAATATTGTTTGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGc < 1:1193303/69‑1 (MQ=255) tatTGTTTGCCCACCAGGCAAGTTCAGTGACAACGTCGGGGTCTTTAGCAATCACTACGCCTGCCAcca > 1:1975364/1‑67 (MQ=255) tatTGTTTGCCCACCAGGCAAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACTACGCCTGCCAcca > 1:2198634/1‑67 (MQ=255) tatTGTTTGCCCACCAGGCAAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACTACGCCTGCCAcca > 1:525298/1‑67 (MQ=255) tatTGTTTGCCCACCAGGCAAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACTACGCCTGCCAcca > 1:2122374/1‑67 (MQ=255) tatTGTTTGCCCACCAGGCAAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACTACGCCTGCCAcca > 1:514233/1‑67 (MQ=255) tatTGTTTGCCCACCAGGCAAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACTACGCCTGCCAcca > 1:2275590/1‑67 (MQ=255) tatTGTTTGCCCACCAGGCAAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACTACGCCTGCCAcca > 1:1751196/1‑67 (MQ=255) tatTGTTTGCCCACCAGGCAAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACTACGCCTGCCAcca > 1:668695/1‑67 (MQ=255) tatTGTTTGCCCACCAGGCAAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACTACGCCTGCCAcca > 1:3317897/1‑67 (MQ=255) tatTGTTTGCCCACCAGGCAAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACTACGCCTGCCAcca > 1:1158236/1‑67 (MQ=255) tatTGTTTGCCCACCAGGCAAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACTACGCCTGCCAcca > 1:835486/1‑67 (MQ=255) tatTGTTTGCCCACCAGGCAAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACTACGCCTGCCAcca > 1:3359634/1‑67 (MQ=255) tatTGTTTGCCCACCAGGCAAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACTACGCCTGCCAcc > 1:3190145/1‑67 (MQ=255) tatTGTTTGCCCACCAGGCAAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACTACGCCTGCCAcc > 1:1831937/1‑67 (MQ=255) atTGTTTGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTa > 1:608183/1‑68 (MQ=255) atTGTTTGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTa > 1:1279625/1‑68 (MQ=255) atTGTTTGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTAc > 1:3400173/1‑69 (MQ=255) atTGTTTGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTAc > 1:1877847/1‑69 (MQ=255) atTGTTTGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTAc > 1:1522647/1‑69 (MQ=255) ttGTTTGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACg > 1:959847/1‑69 (MQ=255) tGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTg < 1:1551276/68‑1 (MQ=255) tGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTg < 1:672303/68‑1 (MQ=255) tGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTg < 1:2003141/68‑1 (MQ=255) tGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTg < 1:1068124/68‑1 (MQ=255) aGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGa < 1:1896637/69‑1 (MQ=255) aGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGa < 1:2128774/69‑1 (MQ=255) gACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCg > 1:3386673/1‑68 (MQ=255) aCAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTg > 1:2361909/1‑69 (MQ=255) aCAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTg > 1:2505632/1‑69 (MQ=255) aCAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTg > 1:2214748/1‑69 (MQ=255) aCAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTg > 1:570209/1‑69 (MQ=255) aCAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTg > 1:85533/1‑69 (MQ=255) aCAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTg > 1:1294200/1‑69 (MQ=255) aCAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTg > 1:809708/1‑69 (MQ=255) cGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATg < 1:11469/69‑1 (MQ=255) cGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATg < 1:1598652/69‑1 (MQ=255) cGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTAAGATATTTCGTGCATg < 1:2831867/69‑1 (MQ=255) tCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATGaa < 1:1007093/69‑1 (MQ=255) tCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATGaa < 1:2474539/69‑1 (MQ=255) tCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATGaa < 1:1470227/69‑1 (MQ=255) tCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATGaa < 1:365693/69‑1 (MQ=255) tCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATGaa < 1:1985153/69‑1 (MQ=255) ggTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATGAATGc < 1:1187981/68‑1 (MQ=255) ggTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATGAATGc < 1:2755793/68‑1 (MQ=255) ggTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATGAATGc < 1:864537/68‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:340119/69‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:3322982/69‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:575625/69‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:1012483/69‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:538081/69‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:2856865/69‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:2107339/69‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:2217494/69‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:2305187/69‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:1154749/69‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:2428135/69‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:1126621/69‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:1061382/69‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:2707068/69‑1 (MQ=255) cactacGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc < 1:2754873/69‑1 (MQ=255) caccacGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc > 1:857440/1‑69 (MQ=255) caccacGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc > 1:2830562/1‑69 (MQ=255) caccacGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc > 1:1955804/1‑69 (MQ=255) caccacGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGc > 1:751189/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:136818/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:1436260/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:999427/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:735527/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:1502142/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:1551920/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:1577457/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:1686191/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:2161636/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:416201/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:2330078/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:3388987/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:2555854/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:2671489/1‑69 (MQ=255) acGCCTGCCACCACGTCAGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCt > 1:3088166/1‑69 (MQ=255) | ACGCCAATATTGTTTGCCCACCAGGCCAGTTCAGTGACAACGTCCGGGTCTTTAGCAATCACCACGCCGGCCACTACGTCTGAGTGACCGTTCAGATATTTCGTGCATGAATGCAACACCAGATCGGCACCT > minE/2302542‑2302673 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |