| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,317,252 | C→T | 30.5% | R309R (CGC→CGT) | glpX → | fructose 1,6‑bisphosphatase II |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,317,252 | 0 | C | T | 30.5% | 98.9 / 45.9 | 98 | R309R (CGC→CGT) | glpX | fructose 1,6‑bisphosphatase II |
| Reads supporting (aligned to +/- strand): ref base C (21/47); new base T (20/10); total (41/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.63e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01 | |||||||||||
CTGCTGGAAGGCATTAGCCGCAAAGGCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGAAATGCA > minE/2317193‑2317320 | ctgctgGAAGGCATTAGCCGCAAAGGCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCa > 1:1448809/1‑69 (MQ=255) ggAAGGCATTAGCCGCAAAGGCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCa < 1:307830/64‑1 (MQ=255) ggAAGGCATTAGCCGCAAAGGCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCa < 1:1973879/64‑1 (MQ=255) cATTAGCCGCAAAGGCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTc > 1:1129371/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTcgc > 1:2971658/1‑69 (MQ=255) aTTAGCCGCAAAGGCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTcgc > 1:1567090/1‑69 (MQ=255) aTTAGCCGCAAAGGCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTcgc > 1:207581/1‑69 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAACCGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:2750290/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:1994037/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:2640343/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:2320237/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:1791515/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:1783734/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:1574794/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:1588099/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:1965462/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:1860501/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:1752373/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:3308910/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:477565/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:1652510/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:1124907/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:588358/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcgt > 1:749649/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcg > 1:1268304/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcg > 1:585951/1‑68 (MQ=255) aTTAGCCGCAAAGGCAATATCGCCACCACCGAAACGCTGCTGATCCGTGGTAAATCACGCACCATTcg > 1:1076364/1‑68 (MQ=255) gCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCa < 1:172526/60‑1 (MQ=255) gCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCa > 1:1019888/1‑60 (MQ=255) gCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCa < 1:2287803/60‑1 (MQ=255) gCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCa < 1:2988054/60‑1 (MQ=255) gCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCa > 1:311636/1‑60 (MQ=255) gCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCa < 1:564207/60‑1 (MQ=255) gCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCa > 1:865069/1‑60 (MQ=255) gCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCa > 1:1048649/1‑60 (MQ=255) gCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCa > 1:1421051/1‑60 (MQ=255) gCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCa < 1:1117177/60‑1 (MQ=255) gCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCa > 1:1601868/1‑60 (MQ=255) gCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCa < 1:1260210/60‑1 (MQ=255) tatCGCCACCACCGAAACGCTGCTGATCCGTGGTaa < 1:3005781/36‑1 (MQ=16) tatCGCCACCACCGAAACGCTGCTGATCCGTGGTaa < 1:1163130/36‑1 (MQ=16) tatCGCCACCACCGAAACGCTGCTGATCCGTGGTaa < 1:1353095/36‑1 (MQ=16) tatCGCCACCACCGAAACGCTGCTGATCCGTGGTaa < 1:1812437/36‑1 (MQ=16) tatCGCCACCACCGAAACGCTGCTGATCCGTGGTaa < 1:1602253/36‑1 (MQ=16) tatCGCCACCACCGAAACGCTGCTGATCCGTGGTaa < 1:1750497/36‑1 (MQ=16) tatCGCCACCACCGAAACGCTGCTGATCCGTGGTaa < 1:3196160/36‑1 (MQ=16) tatCGCCACCACCGAAACGCTGCTGATCCGTGGTaa < 1:3425534/36‑1 (MQ=16) tatCGCCACCACCGAAACGCTGCTGATCCGTGGTaa < 1:170617/36‑1 (MQ=16) atCGCCACCACCGAAACGCTGCTGATCCGTGGTaa < 1:681831/35‑1 (MQ=16) tCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACt < 1:1910828/69‑1 (MQ=255) tCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACt < 1:1950333/69‑1 (MQ=255) tCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACt > 1:1565903/1‑69 (MQ=255) tCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACt < 1:863605/69‑1 (MQ=255) tCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCAACATTCGCCGCATTCAGTCCATCCACt < 1:447517/69‑1 (MQ=255) aCTACCGAAACGCTGCTGATCCGCGGCTAGTCACGCACCATTCGCCGCa < 1:342587/49‑1 (MQ=255) ccGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGAt > 1:2176719/1‑68 (MQ=255) ccGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGAt > 1:2957247/1‑68 (MQ=255) ccGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGAt > 1:2952580/1‑68 (MQ=255) ccGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGAt > 1:2923748/1‑68 (MQ=255) ccGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGAt > 1:2892146/1‑68 (MQ=255) ccGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGAt > 1:1007323/1‑68 (MQ=255) ccGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGAt > 1:2065016/1‑68 (MQ=255) ccGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGAt > 1:752014/1‑68 (MQ=255) ccGAAACGCTGCTGATCCGCGGCAAGTCACGCACAATTCGCCGCATTCAGTCCATCCACTATCTGGAt > 1:1638469/1‑68 (MQ=255) aaaCGCTTCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCa < 1:1601962/69‑1 (MQ=255) aaaCGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGTATCGCa < 1:942529/69‑1 (MQ=255) aaaCGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCa < 1:2358800/69‑1 (MQ=255) aaaCGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCa < 1:1435157/69‑1 (MQ=255) aaaCGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCa < 1:507691/69‑1 (MQ=255) aaaCGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCa < 1:1962213/69‑1 (MQ=255) aCGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCaaa < 1:1730340/69‑1 (MQ=255) aCGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCaaa < 1:2278950/69‑1 (MQ=255) cGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATGCACTATCTGGATCGCAAAg < 1:1620895/69‑1 (MQ=255) cGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAg < 1:1410722/69‑1 (MQ=255) cGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAg < 1:1908475/69‑1 (MQ=255) cGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAg < 1:3014586/69‑1 (MQ=255) cGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAg < 1:2489958/69‑1 (MQ=255) cGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAg < 1:3193355/69‑1 (MQ=255) cGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAg < 1:1749960/69‑1 (MQ=255) cGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAg < 1:1251579/69‑1 (MQ=255) cGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAg < 1:239519/69‑1 (MQ=255) gctgctGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGa < 1:1137704/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTGTCTGGATCGCAAAGACCCGGa < 1:1696424/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:3139534/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:295347/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:513801/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:2849356/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:1135395/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:1418420/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:2429019/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:1489270/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:753131/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:2057186/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:1998092/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:1493258/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:962679/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:985116/69‑1 (MQ=255) gATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAATCCATCCACTATCTGGATCGCAAAGACCCGGa < 1:1482225/69‑1 (MQ=255) cgGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGAAATGCa < 1:1386800/69‑1 (MQ=255) | CTGCTGGAAGGCATTAGCCGCAAAGGCAATATCGCGACTACCGAAACGCTGCTGATCCGCGGCAAGTCACGCACCATTCGCCGCATTCAGTCCATCCACTATCTGGATCGCAAAGACCCGGAAATGCA > minE/2317193‑2317320 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |