| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,317,510 | C→T | 59.7% | A26A (GCC→GCT) | fpr → | ferredoxin‑NADP reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,317,510 | 0 | C | T | 59.7% | 22.5 / 42.0 | 62 | A26A (GCC→GCT) | fpr | ferredoxin‑NADP reductase |
| Reads supporting (aligned to +/- strand): ref base C (13/12); new base T (2/35); total (15/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.90e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01 | |||||||||||
TAACAGGCAAAGTCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTACCGCCGGGCAATTTACCAAGCTTGGCCTTGAA > minE/2317446‑2317558 | tAACAGGCAAAGTCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCg > 1:1564679/1‑69 (MQ=255) aCAGGCAAAGTCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTg > 1:2849256/1‑69 (MQ=255) aCAGGCAAAGTCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTg > 1:632091/1‑69 (MQ=255) aGGCAAAGTCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCt > 1:3095646/1‑69 (MQ=255) gTCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGttt < 1:3094158/69‑1 (MQ=255) gTCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGttt < 1:3090079/69‑1 (MQ=255) gTCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGttt < 1:26667/69‑1 (MQ=255) gTCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGttt < 1:2028880/69‑1 (MQ=255) gTCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGttt < 1:2772765/69‑1 (MQ=255) gTCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGttt < 1:627979/69‑1 (MQ=255) tCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGttt > 1:740885/1‑68 (MQ=255) tCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTa > 1:1885732/1‑69 (MQ=255) tCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTa > 1:65870/1‑69 (MQ=255) aCTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTAcc > 1:791588/1‑69 (MQ=255) aCTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTAcc > 1:3391106/1‑69 (MQ=255) aCTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTAcc > 1:2329163/1‑69 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:2901426/69‑1 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:3365146/69‑1 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:2823934/69‑1 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:2532658/69‑1 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:2435481/69‑1 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:3027821/69‑1 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:3048499/69‑1 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:2278935/69‑1 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:223425/69‑1 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:3185815/69‑1 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:355303/69‑1 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:1989680/69‑1 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:1762370/69‑1 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:1584722/69‑1 (MQ=255) cAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:1294368/69‑1 (MQ=255) cTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTACCGCCGGGCAATTTa > 1:2913653/1‑68 (MQ=255) cTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTACCGCCGGGCAATTTa > 1:2296795/1‑68 (MQ=255) cTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTACCGCCGGGCAATTTa > 1:2341710/1‑68 (MQ=255) cTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTACCGCCGGGCAATTTa > 1:1326274/1‑68 (MQ=255) gCCCTGTTTAGTCTCACCGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCaa < 1:3031698/54‑1 (MQ=255) tAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTACCGCCGGGCAATTTACCAAGCTTGGCCTTGaa < 1:2597219/67‑1 (MQ=255) tAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTACCGCCGGGCAATTTACCAAGCTTGGCCTTGaa < 1:2156255/67‑1 (MQ=255) tAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTACCGCCGGGCAATTTACCAAGCTTGGCCTTGaa < 1:143865/67‑1 (MQ=255) tAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTACCGCCGGGCAATTTACCAAGCTTGGCCTTGaa < 1:1043442/67‑1 (MQ=255) tAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTACCGCCGGGCAATTTACCAAGCTTGGCCTTGa < 1:970639/66‑1 (MQ=255) tAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTACCACCGGGCAATTTACCAAGCTTGGCCTTGa < 1:899101/66‑1 (MQ=255) tcACCGTTCACGCCCCCGTGCTTCCGTTTACCGCCGGGCAATTTACCAAGCTTgg > 1:267459/1‑55 (MQ=255) cGTTCACGCTCCCGTGCTTCCGTTTACCGCCGTGCAATTCACCaaa < 1:525294/46‑2 (MQ=37) cGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:1218662/46‑2 (MQ=38) cGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:947502/46‑2 (MQ=38) cGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:828616/46‑2 (MQ=38) cGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:1503073/46‑2 (MQ=38) cGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:1667374/46‑2 (MQ=38) cGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:1939657/46‑2 (MQ=38) cGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:1947659/46‑2 (MQ=38) cGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:466535/46‑2 (MQ=38) cGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:2444518/46‑2 (MQ=38) cGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:3372703/46‑2 (MQ=38) cGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:3366819/46‑2 (MQ=38) cGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:3211916/46‑2 (MQ=38) cGTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:3063995/46‑2 (MQ=38) cGTTCACGCTCCCGTGCTTCCGTTTACAGCCGGGCAATTCACCaaa < 1:2083129/46‑2 (MQ=255) gTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:619692/45‑2 (MQ=38) gTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:1768504/45‑2 (MQ=38) gTTCACGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:336115/45‑2 (MQ=38) cGCTCCCGTGCTTCCGTTTACCGCCGGGCAATTCACCaaa < 1:3160765/40‑2 (MQ=37) | TAACAGGCAAAGTCACTAAAGTGCAGAACTGGACCGACGCCCTGTTTAGTCTCACCGTTCACGCCCCCGTGCTTCCGTTTACCGCCGGGCAATTTACCAAGCTTGGCCTTGAA > minE/2317446‑2317558 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |