| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,322,829 | C→A | 48.4% | T81T (ACG→ACT) | sbp ← | sulfate transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,322,829 | 0 | C | A | 48.4% | 11.5 / 65.2 | 62 | T81T (ACG→ACT) | sbp | sulfate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (24/8); new base A (23/7); total (47/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 | |||||||||||
TGATCCACTCTTTATCAATCCGCCCGCGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGCTTGTTTAC > minE/2322765‑2322878 | tGATCCACTCTTTATCAATCCGCCCGCGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTg > 1:798946/1‑68 (MQ=255)tGATCCACTCTTTATCAATCCGCCCGCGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTg > 1:3267302/1‑68 (MQ=255) tATCAATCCGCCCGCGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGc < 1:2818690/67‑1 (MQ=255) tATCAATCCGCCCGCGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGc < 1:1435965/67‑1 (MQ=255) tATCAATCCGCCCGCGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGc < 1:3089080/67‑1 (MQ=255) tATCAATCCGCCCGCGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGc < 1:2019675/67‑1 (MQ=255) tATCAATCCGCCCGCGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGc < 1:326606/67‑1 (MQ=255) tCAATCCGCCCGCGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTc < 1:1032863/68‑1 (MQ=255) tCAATCCGCCCGCGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTc < 1:2772216/68‑1 (MQ=255) tCAATCCGCCCGCGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTc < 1:3399911/68‑1 (MQ=255) ccgcccgcGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATAcc > 1:580037/1‑69 (MQ=255) ccgcccgcGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATAcc > 1:710228/1‑69 (MQ=255) ccgcccacGTTCCGCAATTGCGTCCACGTGATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATa > 1:441602/1‑67 (MQ=255) cgcccgcGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGac > 1:1833063/1‑50 (MQ=255) cgcccgcGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATAcc > 1:1913093/1‑68 (MQ=255) cgcccgcGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATAcc > 1:2712079/1‑68 (MQ=255) cgcccgcGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCg > 1:1715756/1‑69 (MQ=255) cgcccgcGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCg > 1:1790417/1‑69 (MQ=255) cgcccgcGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCg > 1:3247566/1‑69 (MQ=255) cgcccgcGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCg > 1:2503655/1‑69 (MQ=255) cgcccgcGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCg > 1:2445433/1‑69 (MQ=255) cgcccgcGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCg > 1:827308/1‑69 (MQ=255) cgcccgcGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCg > 1:2818122/1‑69 (MQ=255) cgcgTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTg > 1:2671243/1‑68 (MQ=255) cgcgTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTg > 1:1185929/1‑68 (MQ=255) cgcgTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTg > 1:2901048/1‑68 (MQ=255) cgcgTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTg > 1:3014054/1‑68 (MQ=255) cgcgTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTg > 1:3209375/1‑68 (MQ=255) cgcgTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTg > 1:3399135/1‑68 (MQ=255) cgcgTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTg > 1:249691/1‑68 (MQ=255) cgcgTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTg > 1:160008/1‑68 (MQ=255) cgcgTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTg > 1:2184289/1‑68 (MQ=255) cgcgTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTg > 1:1745341/1‑68 (MQ=255) cgcgTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTg > 1:2579097/1‑68 (MQ=255) tGCGTCCACGTCATAGGCCAGAGCCATCGTGACAACATCAGCTTCAATACCGTTGATTACCGAct > 1:2507548/1‑64 (MQ=255) tGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATa > 1:1519090/1‑49 (MQ=255) tGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCg > 1:1691849/1‑52 (MQ=255) tGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGc > 1:1986280/1‑69 (MQ=255) tGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGc > 1:824187/1‑69 (MQ=255) tGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGc > 1:820226/1‑69 (MQ=255) tGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGc > 1:550429/1‑69 (MQ=255) tGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGc > 1:424264/1‑69 (MQ=255) tGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGc > 1:301499/1‑69 (MQ=255) gTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATAcc > 1:1835929/1‑48 (MQ=255) gTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCg > 1:3173552/1‑49 (MQ=255) gTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCg > 1:1374696/1‑49 (MQ=255) gTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCg > 1:2336157/1‑49 (MQ=255) gTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCg > 1:2784554/1‑49 (MQ=255) gTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCg > 1:2798814/1‑49 (MQ=255) gTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCg > 1:2297965/1‑49 (MQ=255) gTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCg > 1:163649/1‑49 (MQ=255) gTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCg > 1:1904863/1‑49 (MQ=255) gTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCg > 1:3212681/1‑49 (MQ=255) gTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCg > 1:2008795/1‑49 (MQ=255) gTCCACGTCATAGGCCAGAGCCAGAGTGACAACATCAGCTTCAATACCg > 1:3102831/1‑49 (MQ=255) ggCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGCTTGtttgc < 1:3083311/62‑3 (MQ=255) ggCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGCTTGtttgc < 1:2297567/62‑3 (MQ=255) ggCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGCTTGtttgc < 1:2023646/62‑3 (MQ=255) ggCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGCTTGtttgc < 1:732093/62‑3 (MQ=255) ggCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGCTTGtttgc < 1:1428951/62‑3 (MQ=255) ggCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGCTTGtttgc < 1:861335/62‑3 (MQ=255) ggCCAGAGCCAGAGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGCTTGtttgc < 1:947590/62‑3 (MQ=255) gccagagccagaGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGCTTGtttgc < 1:2168572/61‑3 (MQ=255) | TGATCCACTCTTTATCAATCCGCCCGCGTTCCGCAATTGCGTCCACGTCATAGGCCAGAGCCAGCGTGACAACATCAGCTTCAATACCGTTGATTACCGACGTCGCTTGTTTAC > minE/2322765‑2322878 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |