| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,331,283 | A→G | 38.9% | intergenic (‑188/+242) | sodA ← / ← fdhD | superoxide dismutase, Mn/formate dehydrogenase formation protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,331,283 | 0 | A | G | 38.9% | 22.0 / 34.4 | 54 | intergenic (‑188/+242) | sodA/fdhD | superoxide dismutase, Mn/formate dehydrogenase formation protein |
| Reads supporting (aligned to +/- strand): ref base A (17/16); new base G (11/10); total (28/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
GAAAATGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACT > minE/2331224‑2331332 | gAAAATGCCCAAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAgcggcg > 1:3109226/1‑68 (MQ=38)gAAAATGCCCAAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAgcggcg > 1:3195261/1‑68 (MQ=38)gAAAATGCCCAAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAgcggcg > 1:3302624/1‑68 (MQ=38)gAAAATGCCCAAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAgcggcg > 1:330616/1‑68 (MQ=38)gAAAATGCCCAAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAgcggcg > 1:1524862/1‑68 (MQ=38)gAAAATGCCCAAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAgcggcg > 1:1579156/1‑68 (MQ=38)gAAAATGCCCAAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAgcggcg > 1:2133122/1‑68 (MQ=38)gAAAATGCCCAAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAgcggcg > 1:422988/1‑68 (MQ=38)gAAAATGCCCAAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAgcggcg > 1:2110040/1‑68 (MQ=38)gAAAATGCCCAAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAgcggcg > 1:1967790/1‑68 (MQ=38)gAAAATGCCCAAGATGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAGcggc > 1:139477/1‑67 (MQ=38) aaaaTGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc < 1:3366567/69‑1 (MQ=255) aaaaTGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc < 1:2757265/69‑1 (MQ=255) aaaaTGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc > 1:3323141/1‑69 (MQ=255) aaaaTGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc < 1:2211711/69‑1 (MQ=255) aaaaTGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc < 1:2198574/69‑1 (MQ=255) aaaaTGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc < 1:1030041/69‑1 (MQ=255) aaaaTGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc > 1:834821/1‑69 (MQ=255) aaaaTGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc < 1:3370406/69‑1 (MQ=255) aaaTGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc > 1:883383/1‑68 (MQ=255) gaTGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAGCGGCGGCAACa < 1:2333701/62‑1 (MQ=255) gaTGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAGCGGCGGCAACa < 1:111660/62‑1 (MQ=255) gaTGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAGCGGCGGCAACa < 1:2888199/62‑1 (MQ=255) gaTGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAGCGGCGGCAACa < 1:1174839/62‑1 (MQ=255) gaTGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAGCGGCGGCAACa < 1:3302953/62‑1 (MQ=255) gaTGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAGCGGCGGCAACa < 1:2378630/62‑1 (MQ=255) gaTGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAGCGGCGGCAACa < 1:720533/62‑1 (MQ=255) gaTGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAGCGGCGGCAACa < 1:333034/62‑1 (MQ=255) gaTGTGAAGCAAATCACCCACTTAATGCCGTGATTGCCAGTAAATCGGCAGCGGCGGCAACa < 1:1707818/62‑1 (MQ=255) tgAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGtt > 1:1263073/1‑69 (MQ=255) tgAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGtt > 1:1122582/1‑69 (MQ=255) tgAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGtt > 1:346864/1‑69 (MQ=255) tgAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGtt > 1:3015227/1‑69 (MQ=255) tgAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGtt > 1:3131200/1‑69 (MQ=255) aaGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTaa > 1:992138/1‑69 (MQ=255) aaGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTaa > 1:216525/1‑69 (MQ=255) gCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATc < 1:907481/69‑1 (MQ=255) gCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATc < 1:1233972/69‑1 (MQ=255) gCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATc < 1:2315303/69‑1 (MQ=255) cAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATc < 1:667084/68‑1 (MQ=255) cAACCACTTAATGCCGTGATTGGCAGTAAATCGACAACggcggc > 1:3031554/1‑44 (MQ=255) cAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc > 1:1391333/1‑44 (MQ=255) cAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc > 1:1807393/1‑44 (MQ=255) cAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACggcggc > 1:1956778/1‑44 (MQ=255) aCTTAATGCCGTGATTGCCAGTAAATCGGCAGCGGCGGCAACa < 1:3142784/43‑1 (MQ=38) aaTGCCGTGATTGCCAGTAAATCGACAACGGCGGCa > 1:1848767/1‑36 (MQ=255) aaTGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATc > 1:376034/1‑54 (MQ=255) aaTGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATc < 1:2309473/54‑1 (MQ=255) aaTGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATc > 1:28010/1‑54 (MQ=255) gTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACt < 1:204255/68‑1 (MQ=255) gTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACt < 1:1695171/68‑1 (MQ=255) gTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACt < 1:258551/68‑1 (MQ=255) gTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACt < 1:2814266/68‑1 (MQ=255) gTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACt < 1:1225501/68‑1 (MQ=255) | GAAAATGCCCGAGATGTGAAGCAAATCAACCACTTAATGCCGTGATTGCCAGTAAATCGACAACGGCGGCAACAGGCGAAAGGTTAATCGACAGCACGATTTTTACACT > minE/2331224‑2331332 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |