| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 201,981 | T→C | 29.3% | D108D (GAT→GAC) | gmhB → | D,D‑heptose 1,7‑bisphosphate phosphatase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 201,981 | 0 | T | C | 29.3% | 80.9 / 38.7 | 85 | D108D (GAT→GAC) | gmhB | D,D‑heptose 1,7‑bisphosphate phosphatase |
| Reads supporting (aligned to +/- strand): ref base T (12/48); new base C (7/18); total (19/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01 | |||||||||||
ATCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATATTGATA > minE/201922‑202039 | aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCaa > 1:102928/1‑68 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:935874/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:2332659/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:2049335/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:2007999/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:2927053/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:2608834/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:3266584/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:3369558/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:3387037/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:2890839/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:350485/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:1452668/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:2865838/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:1304447/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:115058/68‑1 (MQ=255)aTCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:709033/68‑1 (MQ=255) tCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:532115/67‑1 (MQ=255) cTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGACTGCCGCaa < 1:1943900/66‑1 (MQ=255) tattatTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAAc < 1:2139720/67‑1 (MQ=255) tattatTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAAc < 1:1978667/67‑1 (MQ=255) tattatTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAAc < 1:180358/67‑1 (MQ=255) attattGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAAc < 1:907752/66‑1 (MQ=255) attGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATc > 1:2726243/1‑69 (MQ=255) ccGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCggg < 1:3177008/68‑1 (MQ=255) ccGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCggg < 1:2224482/68‑1 (MQ=255) ccGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCggg < 1:2994168/68‑1 (MQ=255) ccGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCggg < 1:3086696/68‑1 (MQ=255) ccGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCggg < 1:1244050/68‑1 (MQ=255) ccGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCggg < 1:1598821/68‑1 (MQ=255) ccGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCggg < 1:819635/68‑1 (MQ=255) ccGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCggg < 1:3368553/68‑1 (MQ=255) ccGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCggg < 1:1289053/68‑1 (MQ=255) gCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACcaca > 1:123003/1‑60 (MQ=255) gCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGa > 1:1156679/1‑68 (MQ=255) gCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGAt > 1:503894/1‑69 (MQ=255) gCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGAt > 1:2557200/1‑69 (MQ=255) gCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGAt > 1:2130822/1‑69 (MQ=255) gCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGAt > 1:2911331/1‑69 (MQ=255) gCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGAt > 1:3109255/1‑69 (MQ=255) gCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGAt > 1:1578985/1‑69 (MQ=255) gCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGAt > 1:503021/1‑69 (MQ=255) catcCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGcc < 1:2786430/68‑2 (MQ=255) gCAGGGTAGTGTTGAAGAGTTTCGCCAGGGCTGCGATTGCCGCAAACCACATCCggg < 1:586981/57‑1 (MQ=255) gAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGatta < 1:345982/68‑1 (MQ=255) gAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGatta < 1:456347/68‑1 (MQ=255) gagTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTg < 1:3216456/69‑1 (MQ=255) gagTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTg < 1:682470/69‑1 (MQ=255) gagTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTg < 1:715156/69‑1 (MQ=255) gagTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTg < 1:1464591/69‑1 (MQ=255) gagTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTg < 1:1448423/69‑1 (MQ=255) gagTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTg < 1:1134354/69‑1 (MQ=255) gagTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTg < 1:1438074/69‑1 (MQ=255) gagTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTg < 1:1389552/69‑1 (MQ=255) gagTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTg < 1:1230375/69‑1 (MQ=255) gagTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTg < 1:1305923/69‑1 (MQ=255) gagTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTg < 1:1724501/69‑1 (MQ=255) gagTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTg < 1:1601030/69‑1 (MQ=255) gagTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTg < 1:1648546/69‑1 (MQ=255) gTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCa > 1:2951052/1‑69 (MQ=255) cAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATATTGa < 1:1679143/68‑1 (MQ=255) cAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATATTGa < 1:1549667/68‑1 (MQ=255) cAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATATTGa < 1:2834449/68‑1 (MQ=255) cAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATATTGa < 1:3218961/68‑1 (MQ=255) cAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATATTGa < 1:319362/68‑1 (MQ=255) cAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATATTGa < 1:1831230/68‑1 (MQ=255) cAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATATTGa < 1:2102311/68‑1 (MQ=255) cAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATATTGa < 1:263202/68‑1 (MQ=255) cAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATATTGa < 1:288143/68‑1 (MQ=255) cAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATATTGa < 1:2694369/68‑1 (MQ=255) aGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATATTGa < 1:3235941/67‑1 (MQ=255) aGGTCTGCGACTGCCGCAAACCACATCCGGGGATGTTTTTGTCAGCACGCGATTATTTGCATATTGata > 1:1473179/1‑69 (MQ=255) aGGTCTGCGACTGCCGCAAACCACATCCGGGGATGTTTTTGTCAGCACGCGATTATTTGCATATTGata > 1:1533733/1‑69 (MQ=255) aGGTCTGCGACTGCCGCAAACCACATCCGGGGATGTTTTTGTCAGCACGCGATTATTTGCATATTGata > 1:1730506/1‑69 (MQ=255) aGGTCTGCGACTGCCGCAAACCACATCCGGGGATGTTTTTGTCAGCACGCGATTATTTGCATATTGata > 1:1782392/1‑69 (MQ=255) aGGTCTGCGACTGCCGCAAACCACATCCGGGGATGTTTTTGTCAGCACGCGATTATTTGCATATTGata > 1:2419149/1‑69 (MQ=255) aGGTCTGCGACTGCCGCAAACCACATCCGGGGATGTTTTTGTCAGCACGCGATTATTTGCATATTGat > 1:1577668/1‑68 (MQ=255) aGGTCTGCGACTGCCGCAAACCACATCCGGGGATGTTTTTGTCAGCACGCGATTATTTGCATATTGat > 1:1341012/1‑68 (MQ=255) cTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATAtt < 1:716454/61‑1 (MQ=255) cTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATAtt < 1:112403/61‑1 (MQ=255) cTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATAtt < 1:3300320/61‑1 (MQ=255) cTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATAtt < 1:2907322/61‑1 (MQ=255) cTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATAtt < 1:2706735/61‑1 (MQ=255) tGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATAtt < 1:2594017/60‑1 (MQ=255) aTTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTg < 1:738222/50‑1 (MQ=255) | ATCTATTATTGCCCGCATCATCCGCAGGGTAGTGTTGAAGAGTTTCGCCAGGTCTGCGATTGCCGCAAACCACATCCGGGGATGCTTTTGTCAGCACGCGATTATTTGCATATTGATA > minE/201922‑202039 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |