| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,423,908 | G→A | 25.1% | A37V (GCC→GTC) | rffC ← | TDP‑fucosamine acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,423,908 | 0 | G | A | 25.1% | 134.1 / 37.6 | 107 | A37V (GCC→GTC) | rffC | TDP‑fucosamine acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (29/51); new base A (12/15); total (41/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.97e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.99e-01 | |||||||||||
Only 100 of 107 total aligned reads displayed.
GGCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAG > minE/2423847‑2423972 | ggCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGtt < 1:2070468/69‑1 (MQ=255)ggCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGtt < 1:2480059/69‑1 (MQ=255)ggCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGtt < 1:55958/69‑1 (MQ=255)ggCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGtt < 1:605923/69‑1 (MQ=255)ggCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGtt < 1:2447210/69‑1 (MQ=255)ggCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGtt < 1:698881/69‑1 (MQ=255) gcaggAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:1891985/4‑68 (MQ=255) gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGAGATTGTTCACGGGTAGCGCCaa > 1:2363746/1‑68 (MQ=255) gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:2712156/1‑68 (MQ=255) gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:3015698/1‑68 (MQ=255) gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:352118/1‑68 (MQ=255) gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:1980569/1‑68 (MQ=255) gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:2018027/1‑68 (MQ=255) gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCa > 1:916595/1‑67 (MQ=255) gCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCa > 1:1735178/1‑67 (MQ=255) gCGGGAATATCGGTCTCTTGTGCCACTACAGCACAGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:2136869/1‑68 (MQ=255) gCGGGAATATCGGTCTCTTGTGCCAATACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCaa > 1:22603/1‑68 (MQ=255) aaTATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAgc > 1:384639/1‑58 (MQ=255) aaTATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAAc > 1:1245819/1‑69 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACtt > 1:2557643/1‑68 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:2157816/1‑69 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:2091649/1‑69 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc < 1:1581536/69‑1 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:2805486/1‑69 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc < 1:1663613/69‑1 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc < 1:2893841/69‑1 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc < 1:380337/69‑1 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:1527198/1‑69 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc < 1:623937/69‑1 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc < 1:1307377/69‑1 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:1298687/1‑69 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:861318/1‑69 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:866927/1‑69 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:1120406/1‑69 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:1045970/1‑69 (MQ=255) atCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTc > 1:970303/1‑69 (MQ=255) tCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATc < 1:1028570/62‑1 (MQ=255) tCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATc < 1:858512/62‑1 (MQ=255) tCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCa > 1:101920/1‑69 (MQ=255) tCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCa > 1:219874/1‑69 (MQ=255) tCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCa > 1:2258491/1‑69 (MQ=255) ggTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCaa > 1:34674/1‑57 (MQ=255) ggTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCAcc > 1:3044965/1‑69 (MQ=255) ggTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCAcc > 1:911764/1‑69 (MQ=255) ggTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCAcc > 1:2792769/1‑69 (MQ=255) ggTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCAcc > 1:671535/1‑69 (MQ=255) ggTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCAcc > 1:3087856/1‑69 (MQ=255) ggTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCAcc > 1:1545223/1‑69 (MQ=255) cTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:1329805/69‑1 (MQ=255) cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:295520/69‑1 (MQ=255) cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:1704870/69‑1 (MQ=255) cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:3085093/69‑1 (MQ=255) cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:2681063/69‑1 (MQ=255) cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:1961149/69‑1 (MQ=255) cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:3180377/69‑1 (MQ=255) cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:1539920/69‑1 (MQ=255) cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:517353/69‑1 (MQ=255) cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:620052/69‑1 (MQ=255) cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:1366730/69‑1 (MQ=255) cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:2223514/69‑1 (MQ=255) cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:2219652/69‑1 (MQ=255) cTACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:2138313/69‑1 (MQ=255) cTACAGCACCGCTATAACTGGCATTGTTCAGGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:3019075/69‑1 (MQ=255) tACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:3081877/68‑1 (MQ=255) tACAGCACCGCTATCACTGACATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGgaga < 1:2272610/68‑1 (MQ=255) ccGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGc < 1:2141603/69‑1 (MQ=255) ccGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGc < 1:1404864/69‑1 (MQ=255) cGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGc < 1:117342/68‑1 (MQ=255) cGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGc < 1:1939063/68‑1 (MQ=255) cGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGc < 1:2375947/68‑1 (MQ=255) gCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTg > 1:170773/1‑69 (MQ=255) cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:2344294/69‑1 (MQ=255) cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:2017021/69‑1 (MQ=255) cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:93165/69‑1 (MQ=255) cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:710350/69‑1 (MQ=255) cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:1997770/69‑1 (MQ=255) cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:1446183/69‑1 (MQ=255) cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:2276632/69‑1 (MQ=255) cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:2929797/69‑1 (MQ=255) cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:1992442/69‑1 (MQ=255) cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:377729/69‑1 (MQ=255) cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:3039707/69‑1 (MQ=255) cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:3246052/69‑1 (MQ=255) cTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGt < 1:1985971/69‑1 (MQ=255) aTCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTg < 1:553812/69‑1 (MQ=255) aTCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTg < 1:3240146/69‑1 (MQ=255) aTCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTg < 1:3237803/69‑1 (MQ=255) aTCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTg < 1:2015164/69‑1 (MQ=255) aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTc < 1:1599843/42‑1 (MQ=255) aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTc < 1:1298800/42‑1 (MQ=255) aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTc < 1:2130674/42‑1 (MQ=255) aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTc < 1:2253259/42‑1 (MQ=255) aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTc < 1:1579928/42‑1 (MQ=255) aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGc < 1:2809548/67‑1 (MQ=255) aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAg > 1:814010/1‑69 (MQ=255) aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAg < 1:3224428/69‑1 (MQ=255) aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAg > 1:1155455/1‑69 (MQ=255) aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAg < 1:1149728/69‑1 (MQ=255) aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAg < 1:1607643/69‑1 (MQ=255) aCTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAg < 1:357409/69‑1 (MQ=255) | GGCTAACTGACGTAATGCGGGAATATCGGTCTCTTGTGCCACTACAGCACCGCTATCACTGGCATTGTTCACGGGTAGCGCCAAATCAACTTCACCTTCTACCAGGGAGAATCCCAGCTGTTGCAG > minE/2423847‑2423972 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |