| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,482,012 | A→G | 35.2% | T284T (ACT→ACC) | mdtL ← | multidrug efflux system protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,482,012 | 0 | A | G | 35.2% | 56.4 / 51.8 | 88 | T284T (ACT→ACC) | mdtL | multidrug efflux system protein |
| Reads supporting (aligned to +/- strand): ref base A (36/21); new base G (12/19); total (48/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.30e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATACCAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAACGTACGTGGCTTAAA > minE/2481971‑2482071 | aTACCAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAacac > 1:1594589/1‑68 (MQ=255)aTACCAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACAcc > 1:684750/1‑69 (MQ=255)aTACCAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACAcc > 1:382814/1‑69 (MQ=255)aTACCAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACAcc > 1:2483850/1‑69 (MQ=255)aTACCAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACAcc > 1:1956363/1‑69 (MQ=255)aTACCAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACAcc > 1:2049049/1‑69 (MQ=255)aTACCAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACAcc > 1:408172/1‑69 (MQ=255)aTACCAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACAcc > 1:1210928/1‑69 (MQ=255) ccAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAgg > 1:1568999/1‑57 (MQ=255) ccAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAgg > 1:2320272/1‑57 (MQ=255) ccAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAgg > 1:840390/1‑57 (MQ=255) ccAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAgg > 1:3141860/1‑57 (MQ=255) ccAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAgg > 1:1066143/1‑57 (MQ=255) ccAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATACCCGCCGCCAgg > 1:2273068/1‑57 (MQ=255) caaaaCAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCccgc > 1:665068/3‑50 (MQ=255) cAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTg < 1:469513/63‑1 (MQ=255) cAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTg < 1:2946263/63‑1 (MQ=255) cAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTg < 1:2138426/63‑1 (MQ=255) agaAACCGCATGGGAAGGTGAAACGGCAAGAGTGAt > 1:1850567/1‑36 (MQ=255) agaAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGat > 1:394961/1‑69 (MQ=255) agaAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGat > 1:2114005/1‑69 (MQ=255) agaAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGat > 1:2999288/1‑69 (MQ=255) agaAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGat > 1:9460/1‑69 (MQ=255) agaAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGat > 1:1072154/1‑69 (MQ=255) agaAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGat > 1:859670/1‑69 (MQ=255) agaAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGat > 1:1306544/1‑69 (MQ=255) agaAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGat > 1:731080/1‑69 (MQ=255) agaAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGat > 1:1278551/1‑69 (MQ=255) agaAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGa > 1:308374/1‑68 (MQ=255) gaAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGatc < 1:2614429/69‑1 (MQ=255) gaAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGatc < 1:3434273/69‑1 (MQ=255) aCCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGatcatc > 1:564543/1‑69 (MQ=255) aCCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGatcatc > 1:2496813/1‑69 (MQ=255) aCCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGatcatc > 1:381238/1‑69 (MQ=255) aCCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGatcatc > 1:48690/1‑69 (MQ=255) cATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAacg < 1:1882033/69‑1 (MQ=255) cATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAacg < 1:748532/69‑1 (MQ=255) cATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAacg < 1:1401925/69‑1 (MQ=255) tGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAacgta < 1:1286640/69‑1 (MQ=255) gggAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAacgta < 1:722509/68‑1 (MQ=255) gggAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAacgta < 1:1205902/68‑1 (MQ=255) gggAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAacgta < 1:1461019/68‑1 (MQ=255) ggAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGatca > 1:2425619/1‑59 (MQ=255) ggAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAacgtacg > 1:110173/1‑69 (MQ=255) ggAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAacgtac > 1:3077292/1‑68 (MQ=255) aaGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGATCATCAACGTACGTg > 1:979822/1‑69 (MQ=255) aaGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGATCATCAACGTACGTg > 1:2888367/1‑69 (MQ=255) aaGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGATCATCAACGTACGTg > 1:2833445/1‑69 (MQ=255) aaGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGATCATCAACGTACGTg > 1:329237/1‑69 (MQ=255) aaGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGATCATCAACGTACGTg > 1:720824/1‑69 (MQ=255) aaGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGATCATCAACGTACGTg > 1:648878/1‑69 (MQ=255) aaGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGATCATCAACGTACGTg > 1:2688990/1‑69 (MQ=255) aaGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGATCATCAACGTACGTg > 1:2687913/1‑69 (MQ=255) aaGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGATCATCAACGTACGTg > 1:2458419/1‑69 (MQ=255) aaGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGATCATCAACGTACGTg > 1:2174230/1‑69 (MQ=255) aaGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGATCATCAACGTACGTg > 1:2076200/1‑69 (MQ=255) aaGGTGAAACGGAAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGATCATCAACGTACGTg > 1:2729063/1‑69 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCTCCAGGAATAACACCTGTGAGGTGat < 1:1351615/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:1542561/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:1525164/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:1456763/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:1328397/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:119141/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:782103/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:1830842/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:203581/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:3428771/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:1080847/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:1060977/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:959204/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:3090771/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:2763644/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:2685738/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCGCCAGGAATAACACCTGTGAGGTGat < 1:2978668/54‑1 (MQ=255) aGGTGAAACGGCAAGGGTGATCCCCGCCACCAGGAATAACACCTGTGAGGTGat < 1:1035185/54‑1 (MQ=255) aGGGGAAACGGCAAGGCTGATCCCCGCCGCCAGGAATAACACCTGTGAGGGGat < 1:2684112/54‑1 (MQ=25) gTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAACGTACGTGGc > 1:1545318/1‑68 (MQ=255) gTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAACGTACGTGGc > 1:1778963/1‑68 (MQ=255) gTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAACGTACGTGGc > 1:1144929/1‑68 (MQ=255) aCGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTTATCATCAACGTACGTGGCTTaaa < 1:3321248/68‑1 (MQ=255) aCGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAACGTACGTGGCTTaaa < 1:477424/68‑1 (MQ=255) aCGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAACGTACGTGGCTTaaa < 1:1608461/68‑1 (MQ=255) aCGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAACGTACGTGGCTTaaa < 1:412428/68‑1 (MQ=255) aCGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAACGTACGTGGCTTaaa < 1:12370/68‑1 (MQ=255) aCGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAACGTACGTGGCTTaaa < 1:1200600/68‑1 (MQ=255) aCGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAACGTACGTGGCTTaaa < 1:1714474/68‑1 (MQ=255) aCGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAACGTACGTGGCTTaaa < 1:3374453/68‑1 (MQ=255) aCGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAACGTACGTGGCTTaaa < 1:3274504/68‑1 (MQ=255) | ATACCAAACAGAGAAACCGCATGGGAAGGTGAAACGGCAAGAGTGATCCCCGCCGCCAGGAATAACACCTGCGAGGTGATCATCAACGTACGTGGCTTAAA > minE/2481971‑2482071 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |