| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,496,207 | G→A | 45.2% | N39N (AAC→AAT) | emrD ← | multidrug efflux system protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,496,207 | 0 | G | A | 45.2% | 20.0 / 76.4 | 95 | N39N (AAC→AAT) | emrD | multidrug efflux system protein |
| Reads supporting (aligned to +/- strand): ref base G (28/24); new base A (24/19); total (52/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 101 total aligned reads displayed.
ACCGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCATCTGACCGACGGCCAC > minE/2496153‑2496275 | acCGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCgcgcgc < 1:2983124/69‑1 (MQ=255)acCGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCgcgcgc < 1:1439406/69‑1 (MQ=255)acCGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCgcgcgc < 1:1582270/69‑1 (MQ=255)acCGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCgcgcgc < 1:2668440/69‑1 (MQ=255)acCGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCgcgcgc < 1:272096/69‑1 (MQ=255)acCGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCgcgcgc < 1:2977487/69‑1 (MQ=255)acCGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCgcgcgc < 1:3051119/69‑1 (MQ=255)acCGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCgcgcgc < 1:3222731/69‑1 (MQ=255)acCGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCgcgcgc < 1:3315637/69‑1 (MQ=255)acCGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCgcgcgc < 1:447707/69‑1 (MQ=255)acCGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCgcgcgc < 1:606716/69‑1 (MQ=255)acCGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCgcgcgc < 1:80271/69‑1 (MQ=255) ccGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCgcgcgc < 1:959097/68‑1 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGGCATTgag > 1:1156126/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:2414938/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:2562684/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:2087375/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:1791695/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:1649974/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:989324/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:1408006/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:1346535/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:1236707/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:1175102/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:1152618/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:1146690/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:1101212/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:1362115/1‑58 (MQ=255) cGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTgag > 1:1052413/1‑58 (MQ=255) agcagATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCa < 1:1412213/69‑1 (MQ=255) agcagATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCa < 1:685801/69‑1 (MQ=255) agcagATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCa < 1:3317014/69‑1 (MQ=255) agcagATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCa < 1:1013667/69‑1 (MQ=255) agcagATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCa < 1:819103/69‑1 (MQ=255) agcagATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCa < 1:1154781/69‑1 (MQ=255) agcagATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCa < 1:964935/69‑1 (MQ=255) agcagATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCa < 1:10113/69‑1 (MQ=255) agcagATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCa < 1:2341689/69‑1 (MQ=255) agcagATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCa < 1:206808/69‑1 (MQ=255) agcagATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCa < 1:1516071/69‑1 (MQ=255) agcagATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCa < 1:1687975/69‑1 (MQ=255) gcagATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCa < 1:3269293/68‑1 (MQ=255) gcagATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCa < 1:2777667/68‑1 (MQ=255) agATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCgcgcgc < 1:487964/56‑1 (MQ=255) gATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCAATAg > 1:2608014/1‑69 (MQ=255) gATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCAATAg > 1:513532/1‑69 (MQ=255) gATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCAATAg > 1:1297103/1‑69 (MQ=255) gATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCAATAg > 1:1704296/1‑69 (MQ=255) gATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCAATAg > 1:3005465/1‑69 (MQ=255) gATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCAATAg > 1:2143094/1‑69 (MQ=255) gATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCAATAg > 1:85437/1‑69 (MQ=255) cccATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCa < 1:1334129/57‑1 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:2039110/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:2987416/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:3326239/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:1737846/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:375281/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:1666045/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:568530/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:1634273/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:66821/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:160881/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:1384764/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:1545018/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:1012277/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:1495383/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:2945903/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:2889096/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:2027418/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:2068112/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:1343977/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:2812083/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:277496/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:2287864/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:1009205/1‑69 (MQ=255) aCGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATg > 1:2515832/1‑69 (MQ=255) ctctGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGt < 1:2508149/68‑1 (MQ=255) ctctGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGt < 1:204364/68‑1 (MQ=255) ctctGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGt < 1:805997/68‑1 (MQ=255) ctctGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGt < 1:1860529/68‑1 (MQ=255) ctctGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGt < 1:1338903/68‑1 (MQ=255) ctctGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGt < 1:2664729/68‑1 (MQ=255) ctctGCACCGCCCCTTCACGGACATTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGt < 1:2757227/68‑1 (MQ=255) ctGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGc > 1:81878/1‑45 (MQ=255) ccGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCa < 1:2981926/69‑1 (MQ=255) ccGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCa < 1:3013556/69‑1 (MQ=255) ccGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCa < 1:3030895/69‑1 (MQ=255) ccGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCa < 1:831160/69‑1 (MQ=255) ccGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCa < 1:2187188/69‑1 (MQ=255) ccGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCa < 1:2283463/69‑1 (MQ=255) ccGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCa < 1:1791368/69‑1 (MQ=255) gCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCAt > 1:2360340/1‑68 (MQ=255) cACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCATCTGACCGa > 1:1687864/1‑69 (MQ=255) cACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCATATGACCGa > 1:1720608/1‑69 (MQ=255) gTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCATCTGACCGACGGCCAc < 1:645881/69‑1 (MQ=255) gTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCATCTGACCGACGGCCAc < 1:825493/69‑1 (MQ=255) gTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCATCTGACCGACGGCCAc < 1:897036/69‑1 (MQ=255) gTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCATCTGACCGACGGCCAc < 1:490791/69‑1 (MQ=255) gTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCATCTGACCGACGGCCAc < 1:2878011/69‑1 (MQ=255) gTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCATCTGACCGACGGCCAc < 1:2562386/69‑1 (MQ=255) | ACCGTAAGTCAGCAGATAAGCGCCCATTACGCTCTGCACCGCCCCTTCACGGACGTTGAGATCGCGCGCCATATCGGCAATAGCTGGAATATAAATGGTTTGCGCCATCTGACCGACGGCCAC > minE/2496153‑2496275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |