| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,497,255 | C→T | 44.2% | intergenic (‑932/‑2) | emrD ← / → ivbL | multidrug efflux system protein/ilvB operon leader peptide |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,497,255 | 0 | C | T | 44.2% | 12.9 / 46.5 | 61 | intergenic (‑932/‑2) | emrD/ivbL | multidrug efflux system protein/ilvB operon leader peptide |
| Reads supporting (aligned to +/- strand): ref base C (13/21); new base T (16/11); total (29/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 | |||||||||||
CATTGTCTCCCCTGTAAAGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCAAAACTACTACCAACTGCGCCATCCGCCGCAGTG > minE/2497191‑2497313 | cATTGTCTCCCCTGTAAAGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAAt < 1:2162605/68‑1 (MQ=255)cATTGTCTCCCCTGTAAAGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAAt < 1:817028/68‑1 (MQ=255)cATTGTCTCCCCTGTAAAGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAAt < 1:1401050/68‑1 (MQ=255)cATTGTCTCCCCTGTAAAGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAAt < 1:3387413/68‑1 (MQ=255)cATTGTCTCCCCTGTAAAGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAAt < 1:1587437/68‑1 (MQ=255) cTGTAAAGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTc < 1:2216881/66‑1 (MQ=255) cTGTAAAGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTc < 1:2600276/66‑1 (MQ=255) aaGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTc < 1:1196062/61‑1 (MQ=255) aaGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTc < 1:3392369/61‑1 (MQ=255) aaGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTc < 1:2247810/61‑1 (MQ=255) aaGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTc < 1:2311249/61‑1 (MQ=255) aaGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTc < 1:18310/61‑1 (MQ=255) aaGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTc < 1:179123/61‑1 (MQ=255) aaTATTGTTAAACACAAATCCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCaa > 1:406637/1‑59 (MQ=255) aaTATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTAGTTCCATGCTCAACGCaa > 1:92070/1‑59 (MQ=255) aaTATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCaa > 1:2414143/1‑59 (MQ=255) aaTATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCaa > 1:2597420/1‑59 (MQ=255) aaTATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCaa > 1:2345231/1‑59 (MQ=255) aaTATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCaa > 1:2709219/1‑59 (MQ=255) aaTATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCaa > 1:3004272/1‑59 (MQ=255) aaTATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCaa > 1:581644/1‑59 (MQ=255) aaTATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCaa > 1:2473548/1‑59 (MQ=255) aaTATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCAAAACTACTAcc < 1:1288167/69‑1 (MQ=255) aaTATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCAAAACTACTAcc < 1:3422416/69‑1 (MQ=255) aaTATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCAAAACTACTAcc < 1:3368489/69‑1 (MQ=255) aaTATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCAAAACTACTAcc < 1:1659843/69‑1 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGacta > 1:1726226/1‑39 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCTAAACTACTACCaa > 1:2846942/1‑69 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCTAAACTACTACCaa > 1:2843075/1‑69 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCaa > 1:2855186/1‑69 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCaa > 1:105282/1‑69 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCaa > 1:631080/1‑69 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCaa > 1:3405449/1‑69 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCaa > 1:3401564/1‑69 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCaa > 1:3280945/1‑69 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCaa > 1:3277213/1‑69 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCaa > 1:2852890/1‑69 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCaa > 1:1715057/1‑69 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCaa > 1:2035389/1‑69 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCaa > 1:2358444/1‑69 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCaa > 1:1038776/1‑69 (MQ=255) tatTGTTAAACACAAAACCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCa > 1:1731514/1‑68 (MQ=255) atTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCAAAACTACTACCAAc > 1:2871312/1‑69 (MQ=255) cacaAAACCAACAAGGTCCCCAATGACTACTTCCATg > 1:380169/1‑37 (MQ=255) cacaAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCAAAACTACTACCAACTGCGCCATc > 1:1952912/1‑69 (MQ=255) cacaAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCAAAACTACTACCAACTGCGCCATc > 1:2048721/1‑69 (MQ=255) aaCCAACGAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCAACTGCGCCATccg < 1:1074924/66‑1 (MQ=255) aaCCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCAACTGCGCCATccg < 1:1301813/66‑1 (MQ=255) aaCCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCAACTGCGCCATccg < 1:1956753/66‑1 (MQ=255) aaCCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCAACTGCGCCATccg < 1:3434159/66‑1 (MQ=255) aaCCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCAACTGCGCCATccg < 1:2607964/66‑1 (MQ=255) aaCCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCAACTGCGCCATccg < 1:3402514/66‑1 (MQ=255) aaCCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCAACTGCGCCATccg < 1:1773170/66‑1 (MQ=255) aaCCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCAACTGCGCCATccg < 1:1522953/66‑1 (MQ=255) aaCCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCAACTGCGCCATccg < 1:2522819/66‑1 (MQ=255) aaCCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGCAAAACTACTACCAACTGCGCCATccg < 1:2550130/66‑1 (MQ=255) aaCCAACAAGGTCCCTAATGACTACTTCCATGTTCAACGAAAAACTACTACCAACTGCGCCATccg < 1:3093947/66‑1 (MQ=255) aCCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCAAAACTACTACCAACTGCGCCATCcgccgc < 1:2686689/69‑1 (MQ=255) ccAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCAAAACTACTACCAACTGCGCCATCCGCCGCa < 1:2443875/69‑1 (MQ=255) acaaGGTCCCCAATGACTACTTCCATGCTCAACGCAAAACTACTACCAACTGCGCCATCCGCCGCAGTg < 1:1119226/69‑1 (MQ=255) acaaGGTCCCCAATGACTACTTCCATGCTCAACGCAAAACTACTACCAACTGCGCCATCCGCCGCAGTg < 1:2226227/69‑1 (MQ=255) | CATTGTCTCCCCTGTAAAGCTGTGCTTGTATAAATATTGTTAAACACAAAACCAACAAGGTCCCCAATGACTACTTCCATGCTCAACGCAAAACTACTACCAACTGCGCCATCCGCCGCAGTG > minE/2497191‑2497313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |