| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,561,939 | G→A | 66.3% | I161I (ATC→ATT) | lldR ← | DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,561,939 | 0 | G | A | 66.3% | 57.5 / 42.1 | 77 | I161I (ATC→ATT) | lldR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (9/17); new base A (18/33); total (27/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.25e-01 | |||||||||||
GACGGCTATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGATA > minE/2561875‑2561999 | ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:1615381/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:2248837/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:2040530/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:1991730/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:834881/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:1903091/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:1824898/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:3397640/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:3087645/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:455750/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:148076/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:2554013/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:1427998/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:512866/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:1353516/67‑1 (MQ=255)ggcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:1318795/67‑1 (MQ=255)gACGGCTATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGt < 1:1540256/69‑1 (MQ=255)gACGGCTATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGt < 1:3245771/69‑1 (MQ=255)gACGGCTATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGt < 1:1899147/69‑1 (MQ=255)gACGGCTATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGt < 1:3087753/69‑1 (MQ=255)gACGGCTATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGt < 1:3115338/69‑1 (MQ=255) gcGGCTATGCTTCACAGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAACACAATGt < 1:1511998/67‑1 (MQ=255) aCGGCTATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGt < 1:1082850/68‑1 (MQ=255) cTATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGTTAtgt < 1:3154053/69‑1 (MQ=255) gCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAgg > 1:3004532/1‑69 (MQ=255) aGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCaa > 1:1438114/1‑69 (MQ=255) aGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCaa > 1:864236/1‑69 (MQ=255) aGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCaa > 1:2861526/1‑69 (MQ=255) aGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCaa > 1:1139805/1‑69 (MQ=255) aGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCaa > 1:159272/1‑69 (MQ=255) aGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCaa > 1:460194/1‑69 (MQ=255) aGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCa > 1:1411732/1‑68 (MQ=255) cATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGaa < 1:3264253/69‑1 (MQ=255) cATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGaa < 1:1261891/69‑1 (MQ=255) cATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGaa < 1:2239404/69‑1 (MQ=255) gaagaaACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg < 1:579311/69‑1 (MQ=255) gaagaaACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg < 1:2795586/69‑1 (MQ=255) gaagaaACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg < 1:228173/69‑1 (MQ=255) gaagaaACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg < 1:1678752/69‑1 (MQ=255) gaagaaACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg < 1:1320019/69‑1 (MQ=255) gaagaaACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacg < 1:1238603/69‑1 (MQ=255) gaaACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAaacgaac < 1:1685031/69‑1 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:3175380/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:382436/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:481361/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:766880/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:2137769/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:2689719/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:2648586/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:2625245/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:1299573/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:2403425/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:1478204/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:2349771/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:811426/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:164735/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:2013543/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:1907620/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:1780525/1‑64 (MQ=255) cgcgCATGGTTTGCAGCAACACAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAaacgaac > 1:178405/1‑64 (MQ=255) gTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAg > 1:2665685/1‑69 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:695380/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:2331824/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:877092/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:797324/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:790659/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:950059/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:581141/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:3341/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:2808090/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:2597336/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:2355790/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:2210136/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:1670561/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:1484263/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:1111163/68‑3 (MQ=255) gcaacaCAATGTTATGTGAAGCTTCGGCAATCGACAGATGAAAACGAACGTCCGCTTGTGAGGCGaga < 1:197938/68‑3 (MQ=255) | GACGGCTATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACGATGTTATGTGAGGCTTCGGCAATCGCCAGATGAAAACGAACGTCCGCTTGTGAGGCGATA > minE/2561875‑2561999 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |