| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,562,263 | T→C | 44.0% | A53A (GCA→GCG) | lldR ← | DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,562,263 | 0 | T | C | 44.0% | 24.5 / 80.3 | 100 | A53A (GCA→GCG) | lldR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base T (18/38); new base C (29/15); total (47/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.16e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 114 total aligned reads displayed.
ACGCCAGCGAATAAACGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGCCAGTTGGCGCTCAGCG > minE/2562200‑2562326 | aCGCCAGCGAATAAACGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAg > 1:3135761/1‑69 (MQ=255)aCGCCAGCGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCa > 1:436689/1‑68 (MQ=255)aCGCCAGCGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCa > 1:2210985/1‑68 (MQ=255)aCGCCAGCGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAg > 1:967578/1‑69 (MQ=255)aCGCCAGCGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAg > 1:1592134/1‑69 (MQ=255)aCGCCAGCGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAg > 1:2815374/1‑69 (MQ=255)aCGCCAGCGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAg > 1:3236630/1‑69 (MQ=255)aCGCCAGCGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAg > 1:278270/1‑69 (MQ=255)aCGCCAGCGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAg > 1:1109741/1‑69 (MQ=255)aCGCCAGCGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAg > 1:514834/1‑69 (MQ=255)aCGCCAGCGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAg > 1:1869038/1‑69 (MQ=255)aCGCCAGCGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAg > 1:1958370/1‑69 (MQ=255)aCGCCAGCGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAg > 1:802202/1‑69 (MQ=255)aCGCCAGCGAATAAACGTCCCGCCGCCAAGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAg > 1:395311/1‑69 (MQ=255) cGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAGCGCCTcg > 1:17662/1‑69 (MQ=255) cGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAGCGCCTcg > 1:2362737/1‑69 (MQ=255) cGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAGCGCCTcg > 1:2536618/1‑69 (MQ=255) cGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAGCGCCTcg > 1:1931601/1‑69 (MQ=255) cGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAGCGCCTcg > 1:1591865/1‑69 (MQ=255) cGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAGCGCCTcg > 1:1345581/1‑69 (MQ=255) cGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAGCGCCTcg > 1:3342586/1‑69 (MQ=255) cGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAGCGCCTcg > 1:1211911/1‑69 (MQ=255) cGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAGCGCCTcg > 1:480546/1‑69 (MQ=255) cGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAGCGCCTcg > 1:1114674/1‑69 (MQ=255) cGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAGCGCCTcg > 1:56595/1‑69 (MQ=255) cGAATAAACGTCCCGCCGCCACGTCGACTGAGCAGCACACCTTCGCTTACCAGTTTCGCCAGCGCCTcg > 1:662973/1‑69 (MQ=255) aaCGTCCCGCCGCCGCGTCGACTGATCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAg > 1:1012729/1‑68 (MQ=255) aaCGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAg > 1:1640195/1‑68 (MQ=255) aaCGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAg > 1:1879949/1‑68 (MQ=255) aaCGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAg > 1:784326/1‑68 (MQ=255) aaCGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAg > 1:1873545/1‑68 (MQ=255) aaCGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAg > 1:477900/1‑68 (MQ=255) cGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTg < 1:3383000/68‑1 (MQ=255) cGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTg < 1:1603699/68‑1 (MQ=255) cGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTg < 1:2902873/68‑1 (MQ=255) cGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTg < 1:3181433/68‑1 (MQ=255) cGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTg < 1:3213057/68‑1 (MQ=255) cGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTg < 1:322245/68‑1 (MQ=255) cGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTg < 1:2194821/68‑1 (MQ=255) cGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTg < 1:3235681/68‑1 (MQ=255) cGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTg < 1:3350025/68‑1 (MQ=255) cGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTg < 1:756462/68‑1 (MQ=255) cGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTg < 1:1936547/68‑1 (MQ=255) cGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTg < 1:852750/68‑1 (MQ=255) gccgccgcGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACg < 1:1897085/69‑1 (MQ=255) gccgccgcGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACg < 1:401970/69‑1 (MQ=255) gccgccgcGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACg < 1:837777/69‑1 (MQ=255) gccgccgcGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACg < 1:248944/69‑1 (MQ=255) gccgcGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGa < 1:1005308/69‑1 (MQ=255) gccgcGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGa < 1:494467/69‑1 (MQ=255) gccgcGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGa < 1:1600278/69‑1 (MQ=255) tCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTg < 1:1935041/53‑1 (MQ=255) tGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGt > 1:358390/1‑68 (MQ=255) tGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGt > 1:898074/1‑68 (MQ=255) tGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGt > 1:257678/1‑68 (MQ=255) aCGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTTCGTGATACGCCGAGTTGCATCGcc < 1:605982/69‑1 (MQ=255) aCGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGcc < 1:445156/69‑1 (MQ=255) aCGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGcc < 1:2588515/69‑1 (MQ=255) aCGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGcc < 1:1982562/69‑1 (MQ=255) aCGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGcc < 1:1048227/69‑1 (MQ=255) aCGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGcc < 1:530981/69‑1 (MQ=255) aCGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGcc < 1:469965/69‑1 (MQ=255) aCGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGcc < 1:449362/69‑1 (MQ=255) aCGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGcc < 1:2818188/69‑1 (MQ=255) aCGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGcc < 1:1268446/69‑1 (MQ=255) aCGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGcc < 1:2176598/69‑1 (MQ=255) aCGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGcc < 1:2910078/69‑1 (MQ=255) cGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGCCa > 1:1896919/1‑69 (MQ=255) cGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGCCa > 1:1039537/1‑69 (MQ=255) cGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGCCa > 1:1930493/1‑69 (MQ=255) tacCAGTTTCGCCTGCGCCTCGCGCAGTGAATTTCTCGACACGCCGa < 1:2431177/46‑1 (MQ=255) tacCAGTTTCGCCAGCGCCTCGCGCAGTGAATTTCTCGACACGCCGa < 1:1033080/46‑1 (MQ=21) tacCAGTTTCGCCAGCGCCTCGCGCAGTGAATTTCTCGACACGCCGa < 1:3112986/46‑1 (MQ=21) tacCAGTTTCGCCAGCGCCTCGCGCAGTGAATTTCTCGACACGCCGa < 1:1090280/46‑1 (MQ=21) tacCAGTTTCGCCAGCGCCTCGCGCAGTGAATTTCTCGACACGCCGa < 1:2700641/46‑1 (MQ=21) tacCAGTTTCGCCAGCGCCTCGCGCAGTGAATTTCTCGACACGCCGa < 1:1167155/46‑1 (MQ=21) tacCAGTTTCGCCAGCGCCTCGCGCAGTGAATTTCTCGACACGCCGa < 1:2009729/46‑1 (MQ=21) tacCAGTTTCGCCAGCGCCTCGCGCAGTGAATTTCTCGACACGCCGa < 1:3146482/46‑1 (MQ=21) tacCAGTTTCGCCAGCGCCTCGCGCAGTGAATTTCTCGACACGCCGa < 1:2058380/46‑1 (MQ=21) tacCAGTTTCGCCAGCGCCTCGCGCAGTGAATTTCTCGACACGCCGa < 1:1301985/46‑1 (MQ=21) tacCAGTTTCGCCAGCGCCTCGCGCAGTGAATTTCTCGACACGCCGa < 1:2712408/46‑1 (MQ=21) tacCAGTTTCGCCAGCGCCTCGCGCAGTGAATTTCTCGACACGCCGa < 1:964275/46‑1 (MQ=21) tacCAGTTTCGCCAGCGCCTCGCGCAGTGAATTTCTCGACACGCCGa < 1:2125345/46‑1 (MQ=21) tacCAGTTTCGCCAGCGCCTCGCGCAGTGAATTTCTCGACACGCCGa < 1:1318233/46‑1 (MQ=21) cacCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGCCAGTTGGCGCTc > 1:742118/1‑69 (MQ=255) cacCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGCCAGTTGGCGCTc > 1:3259958/1‑69 (MQ=255) gTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGCCAGTTGGCGCTCAGCg > 1:884984/1‑68 (MQ=255) gTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGCCAGTTGGCGCTCAGCg > 1:3290094/1‑68 (MQ=255) ttGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTg > 1:861742/1‑43 (MQ=255) ttGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTg > 1:2504435/1‑43 (MQ=255) ttGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTg < 1:2599692/43‑1 (MQ=255) ttGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTg < 1:1757315/43‑1 (MQ=255) ttGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTg < 1:2678508/43‑1 (MQ=255) ttGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTg < 1:731106/43‑1 (MQ=255) ttGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTg > 1:3070647/1‑43 (MQ=255) ttGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTg < 1:3104996/43‑1 (MQ=255) ttGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTg < 1:1545705/43‑1 (MQ=255) ttGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTg > 1:166714/1‑43 (MQ=255) ttGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTg > 1:2063129/1‑43 (MQ=255) ttGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTg < 1:1347597/43‑1 (MQ=255) | ACGCCAGCGAATAAACGTCCCGCCGCCGCGTCGACTGAGCAGCACGCCTTCACTCACCAGTTTTGCCAGCGCCTCGCGCAGTGAATTACGTGATACGCCGAGTTGCATCGCCAGTTGGCGCTCAGCG > minE/2562200‑2562326 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |