| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,593,801 | T→C | 31.3% | intergenic (‑72/+1069) | slp ← / ← arsC | outer membrane lipoprotein/arsenate reductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,593,801 | 0 | T | C | 31.3% | 120.1 / 70.5 | 138 | intergenic (‑72/+1069) | slp/arsC | outer membrane lipoprotein/arsenate reductase |
| Reads supporting (aligned to +/- strand): ref base T (31/63); new base C (22/21); total (53/85) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.84e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 138 total aligned reads displayed.
ATCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCTGTTTAGGTGA > minE/2593736‑2593859 | aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:933260/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:2349087/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:2680949/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:2163383/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:2141104/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:3166883/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:3296739/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:1904757/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:1796559/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:1718936/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:506460/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:589447/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:620921/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:1412522/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:881656/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:632725/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:729284/68‑1 (MQ=255)aTCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:674900/68‑1 (MQ=255) ccTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:3388351/66‑1 (MQ=255) cTTATCAACAAATATTAAAACCATAATGGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:3045302/65‑1 (MQ=255) cTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:180615/65‑1 (MQ=255) cTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:3030235/65‑1 (MQ=255) cTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa > 1:782240/1‑65 (MQ=255) cTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:809635/65‑1 (MQ=255) caacaaATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt < 1:2535957/67‑1 (MQ=255) caacaaATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt < 1:636264/67‑1 (MQ=255) caacaaATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt < 1:1822177/67‑1 (MQ=255) caacaaATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt < 1:3157730/67‑1 (MQ=255) caacaaATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt < 1:2157439/67‑1 (MQ=255) caacaaATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTg < 1:1668220/68‑1 (MQ=255) caacaaATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTg < 1:1453417/68‑1 (MQ=255) aacaaATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt < 1:539780/66‑1 (MQ=255) aacaaATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGa < 1:2709779/68‑1 (MQ=255) aacaaATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGa < 1:913419/68‑1 (MQ=255) aacaaATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGa < 1:190506/68‑1 (MQ=255) aacaaATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGa < 1:1871258/68‑1 (MQ=255) acaaATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:1777348/58‑1 (MQ=255) aaaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGt < 1:916574/69‑1 (MQ=255) aaaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGt < 1:2452609/69‑1 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATTTGCCTGATAGTa > 1:378997/1‑69 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATATGc > 1:3090898/1‑60 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATATGc > 1:3315198/1‑60 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATATGc > 1:1024767/1‑60 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATATGc > 1:1134277/1‑60 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTa > 1:98709/1‑69 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTa > 1:3258740/1‑69 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTa > 1:739487/1‑69 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTa > 1:2150267/1‑69 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTa > 1:3425022/1‑69 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTa > 1:737335/1‑69 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTa > 1:2799640/1‑69 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTa > 1:1042098/1‑69 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTa > 1:1628698/1‑69 (MQ=255) aaTATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTa > 1:1336239/1‑69 (MQ=255) ataataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTga > 1:128141/1‑68 (MQ=255) ataataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTga > 1:2356763/1‑68 (MQ=255) ataataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTga > 1:2022579/1‑68 (MQ=255) aataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa > 1:2319314/1‑41 (MQ=255) aataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa > 1:1273077/1‑41 (MQ=255) aataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa > 1:2419515/1‑41 (MQ=255) aataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa > 1:138320/1‑41 (MQ=255) ataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:1083868/40‑1 (MQ=255) ataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGa < 1:2738500/40‑1 (MQ=255) ataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAAc > 1:1995090/1‑62 (MQ=255) ataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTg > 1:1586/1‑69 (MQ=255) ataGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTg > 1:634309/1‑69 (MQ=255) tatTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGtt < 1:2883905/69‑1 (MQ=255) tatTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGtt < 1:3244021/69‑1 (MQ=255) atTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt > 1:3291173/1‑41 (MQ=255) atTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt > 1:3209235/1‑41 (MQ=255) atTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt > 1:2536884/1‑41 (MQ=255) atTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt > 1:423283/1‑41 (MQ=255) atTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGtt < 1:1237041/68‑1 (MQ=255) atTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGtt > 1:2575182/1‑68 (MQ=255) tttCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTta < 1:672786/69‑1 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt > 1:414190/1‑38 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt > 1:1008226/1‑38 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt > 1:487257/1‑38 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt > 1:2742607/1‑38 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt > 1:2809747/1‑38 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt > 1:346442/1‑38 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt > 1:2196642/1‑38 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt > 1:3416989/1‑38 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt > 1:2069985/1‑38 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCt > 1:186390/1‑38 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGTGATAAGCCt > 1:2559181/1‑38 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTAACGTAAACCTGTc < 1:1810246/58‑1 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTAACGTAAACCTGTc < 1:1469581/58‑1 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTAACGTAAACCTGTc < 1:484277/58‑1 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTAACGTAAACCTGTc < 1:436966/58‑1 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTAACGTAAACCTGTc < 1:177453/58‑1 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTAACGTAAACCTGTc < 1:3336231/58‑1 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTAACGTAAACCTGTc < 1:2147383/58‑1 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTAACGTAAACCTGTc < 1:2985072/58‑1 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTAACGTAAACCTGTc < 1:2714007/58‑1 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTAACGTAAACCTGTc < 1:2281881/58‑1 (MQ=255) tCTTTATAGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTAACGTAAACCTGTc < 1:2465228/58‑1 (MQ=255) tataGTTTTCATCTGATTCTGAGGCGATATGCCTGATAGTAACGTAAACCTGTc < 1:2377421/54‑1 (MQ=255) tCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCTGTTTAGGTGa < 1:1599508/66‑1 (MQ=255) tCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCTGTTTAGGTGa < 1:1152601/66‑1 (MQ=255) | ATCCTTATCAACAAATATTAAAACCATAATAGATATTTCTTTATAGTTTTCATCTGATTCTGAGGTGATATGCCTGATAGTAACGTAAACCTGTCTGATGTTTATATCCTTTCTGTTTAGGTGA > minE/2593736‑2593859 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |