| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,605,106 | A→G | 34.5% | L106L (TTG→CTG) | uspA ← | universal stress global response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,605,106 | 0 | A | G | 34.5% | 75.9 / 62.5 | 108 | L106L (TTG→CTG) | uspA | universal stress global response regulator |
| Reads supporting (aligned to +/- strand): ref base A (25/45); new base G (12/25); total (37/71) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.32e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 | |||||||||||
Only 100 of 111 total aligned reads displayed.
TGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGAACCTGGCCCAGGTCGCCGCTGCCGCTCAGGGTTT > minE/2605048‑2605174 | tGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCg < 1:2386069/69‑1 (MQ=255)tGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCg < 1:1736703/69‑1 (MQ=255)tGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCg < 1:1776739/69‑1 (MQ=255)tGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCg < 1:1637523/69‑1 (MQ=255)tGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCg < 1:667248/69‑1 (MQ=255)tGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCg < 1:2331444/69‑1 (MQ=255)tGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCg < 1:1011303/69‑1 (MQ=255)tGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCg < 1:3302995/69‑1 (MQ=255)tGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCg < 1:3220038/69‑1 (MQ=255)tGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCg < 1:2770828/69‑1 (MQ=255)tGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCg < 1:1119382/69‑1 (MQ=255)tGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCg < 1:3008720/69‑1 (MQ=255) gACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCg < 1:2074836/68‑1 (MQ=255) gAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCtt < 1:3392724/68‑1 (MQ=255) gAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCtt < 1:3022584/68‑1 (MQ=255) gAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCtt < 1:2228548/68‑1 (MQ=255) gAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCtt < 1:504189/68‑1 (MQ=255) gAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCtt < 1:3087194/68‑1 (MQ=255) gAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCtt < 1:1809/68‑1 (MQ=255) gAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCtt < 1:3062436/68‑1 (MQ=255) gAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCtt < 1:1773828/68‑1 (MQ=255) gAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCtt < 1:756409/68‑1 (MQ=255) gAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCtt < 1:1070033/68‑1 (MQ=255) gAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCtt < 1:1169904/68‑1 (MQ=255) gAAGACATCAGTTTGCTCCAGAAGTACTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCtt < 1:3243295/68‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:946663/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:2622096/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:867040/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:3325190/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:2559192/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:3357955/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:1278447/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:2415433/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:693683/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:3113529/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:340692/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:373455/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:501948/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:111617/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:1791332/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:1973104/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:1816452/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:512517/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:1905821/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:1857531/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:528522/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTATTGAtt < 1:2093242/69‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCg < 1:2621238/57‑1 (MQ=255) gACATCAGTTTGCTCCAGAAGTCCTCGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:2779034/69‑1 (MQ=255) aCATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCACATCCATATCGTATTTCTTGAtt < 1:228120/68‑1 (MQ=255) aCATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTg < 1:499459/69‑1 (MQ=255) aCATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTg < 1:1777045/69‑1 (MQ=255) aCATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTg < 1:1661226/69‑1 (MQ=255) aCATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTg < 1:2046991/69‑1 (MQ=255) aCATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTg < 1:1517150/69‑1 (MQ=255) cATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTg > 1:2304598/1‑68 (MQ=255) cATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGc > 1:941221/1‑69 (MQ=255) cATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGc > 1:3081182/1‑69 (MQ=255) cATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGc > 1:55302/1‑69 (MQ=255) cATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGc > 1:3240645/1‑69 (MQ=255) cATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGc > 1:2404073/1‑69 (MQ=255) cATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGc > 1:453706/1‑69 (MQ=255) cATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGc > 1:472135/1‑69 (MQ=255) cATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGc > 1:581131/1‑69 (MQ=255) cATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGc > 1:16125/1‑69 (MQ=255) cATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGc > 1:2003611/1‑69 (MQ=255) cATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGc > 1:1724155/1‑69 (MQ=255) cATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAAT‑CATATAGTAatt > 1:1442815/1‑59 (MQ=255) cATCAGTTTGATACAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTg > 1:243748/1‑68 (MQ=255) tGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGAcc > 1:1262158/1‑68 (MQ=255) tGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGAcc > 1:1588148/1‑68 (MQ=255) tGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGAcc > 1:2589208/1‑68 (MQ=255) tGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGAcc > 1:2133806/1‑68 (MQ=255) tGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGAcc > 1:424830/1‑68 (MQ=255) tCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGa < 1:2926073/68‑1 (MQ=255) tCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGa < 1:1017626/68‑1 (MQ=255) tCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGa < 1:1226408/68‑1 (MQ=255) tCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGa < 1:922869/68‑1 (MQ=255) tCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGa < 1:229245/68‑1 (MQ=255) tCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGa < 1:251276/68‑1 (MQ=255) tCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGa < 1:2560357/68‑1 (MQ=255) tCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGa < 1:2672617/68‑1 (MQ=255) gAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGAACCt < 1:2469304/68‑1 (MQ=255) gAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGAACCt < 1:2614562/68‑1 (MQ=255) aGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGATTGCATCGACCAg > 1:2689006/1‑61 (MQ=255) aGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGATTGCATCGACCAGTACCttg > 1:1566456/1‑66 (MQ=255) aGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGATTGCATCGACCAGTACCTgg > 1:2234051/1‑68 (MQ=255) aGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGATTGCATCGACCAGTACCTgg > 1:2184114/1‑68 (MQ=255) aGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGATTGCATCGACCAGTACCTgg > 1:2165820/1‑68 (MQ=255) aGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGATTGCATCGACCAGTACCTgg > 1:2145092/1‑68 (MQ=255) aGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGATTGCATCGACCAGTACCTgg > 1:2575622/1‑68 (MQ=255) aGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGATTGCATCGACCAGTACCTgg > 1:1237561/1‑68 (MQ=255) aGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGATTGCATCGACCAGTACCTgg > 1:1416592/1‑68 (MQ=255) aGTCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGATTGCATCGACCAGTACCTg > 1:294916/1‑67 (MQ=255) tCCTGGTGGTGACCACAAACCACCAGATCCATATCGTATTTCTTGAtt < 1:1838675/48‑1 (MQ=255) gtgACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGAACCTGGCCCAGGTcgcc > 1:1946765/1‑69 (MQ=255) gtgACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGAACCTGGCCCAGGTcgcc > 1:2098185/1‑69 (MQ=255) gtgACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGAACCTGGCCCAGGTcgcc > 1:287552/1‑69 (MQ=255) gtgACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGAACCTGGCCCAGGTcgcc > 1:3344517/1‑69 (MQ=255) aaTCCATATCGTATTTCTTGATTGCATCGACCAGAACCTGGCCCAGGTCGCCGCTGCCGCTCAGGGttt < 1:1663532/69‑1 (MQ=255) | TGACGTGCGGAAGACATCAGTTTGCTCCAGAAGTCCTGGTGGTGACCACAAACCACCAAATCCATATCGTATTTCTTGATTGCATCGACCAGAACCTGGCCCAGGTCGCCGCTGCCGCTCAGGGTTT > minE/2605048‑2605174 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |