Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | minE | 2,619,653 | A→G | 50.7% | A362A (GCT→GCC) | zntA ← | zinc, cobalt and lead efflux system |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | minE | 2,619,653 | 0 | A | G | 50.7% | ‑1.8 / 65.2 | 73 | A362A (GCT→GCC) | zntA | zinc, cobalt and lead efflux system |
Reads supporting (aligned to +/- strand): ref base A (18/18); new base G (31/6); total (49/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.79e-03 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01 |
AATCCACTCCTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGATACGGCTGAAACGGTCGATAAACCGCTCAAT > minE/2619596‑2619712 | aaTCCACTCCTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCAt < 1:1210718/69‑1 (MQ=255) aaTCCACTCCTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCAt < 1:533125/69‑1 (MQ=255) aaTCCACTCCTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCAt < 1:2764050/69‑1 (MQ=255) ccTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCgg > 1:948058/1‑69 (MQ=255) ccTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCgg > 1:2915643/1‑69 (MQ=255) ccTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCgg > 1:2088101/1‑69 (MQ=255) ccTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCgg > 1:2815065/1‑69 (MQ=255) ccTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCgg > 1:2228865/1‑69 (MQ=255) ccTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCgg > 1:458685/1‑69 (MQ=255) ccTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCgg > 1:15577/1‑69 (MQ=255) ccTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCgg > 1:154882/1‑69 (MQ=255) ccTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCgg > 1:150843/1‑69 (MQ=255) ccTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCgg > 1:807664/1‑69 (MQ=255) ccTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCgg > 1:837761/1‑69 (MQ=255) ccTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCgg > 1:266928/1‑69 (MQ=255) ccTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCgg > 1:2641199/1‑69 (MQ=255) ccTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCgg > 1:2509760/1‑69 (MQ=255) tGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGa > 1:846274/1‑69 (MQ=255) tGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGa > 1:19884/1‑69 (MQ=255) tGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGa > 1:1174669/1‑69 (MQ=255) tGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGa > 1:940490/1‑69 (MQ=255) tGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGa < 1:2211539/69‑1 (MQ=255) tGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGa < 1:2207471/69‑1 (MQ=255) gCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGATACGGCTGAAACGGTCGATaa < 1:2815054/69‑1 (MQ=255) gCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGATACGGCTGAAACGGTCGATaa < 1:3213286/69‑1 (MQ=255) gCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGATACGGCTGAAACGGTCGATaa < 1:3202302/69‑1 (MQ=255) gCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGATACGGCTGAAACGGTCGATaa < 1:1607366/69‑1 (MQ=255) gCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGATACGGCTGAAACGGTCGATaa < 1:592156/69‑1 (MQ=255) gCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGATACGGCTGAAACGGTCGATaa < 1:135403/69‑1 (MQ=255) gCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGATACGGCTGAAACGGTCGATaa < 1:1277104/69‑1 (MQ=255) cACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGATACGGCTGAAACGGTCGATaa < 1:209127/68‑1 (MQ=255) cAGCGTTACCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCg < 1:3069154/69‑1 (MQ=255) cAGCGTTACCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCg < 1:1094997/69‑1 (MQ=255) cAGCGTTACCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCg < 1:913888/69‑1 (MQ=255) cAGCGTTACCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCg < 1:2481791/69‑1 (MQ=255) cAGCGTTACCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCg < 1:2477753/69‑1 (MQ=255) cAGCGTTACCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCg < 1:1403107/69‑1 (MQ=255) aGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGa < 1:153234/43‑1 (MQ=255) aGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGa < 1:2458816/43‑1 (MQ=255) aGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGa < 1:1995341/43‑1 (MQ=255) aGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGa < 1:1396610/43‑1 (MQ=255) aGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGa < 1:3066179/43‑1 (MQ=255) ttaCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTc > 1:2478615/3‑67 (MQ=255) ttaCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTc > 1:327510/3‑67 (MQ=255) ttaCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTc > 1:2181769/3‑67 (MQ=255) ttaCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTc > 1:1274166/3‑67 (MQ=255) ttaCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTc > 1:2321372/3‑67 (MQ=255) ttaCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTc > 1:2345198/3‑67 (MQ=255) ttaCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTc > 1:2763744/3‑67 (MQ=255) ttaCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTc > 1:2358850/3‑67 (MQ=255) ttaCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTc > 1:1068341/3‑67 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCaa > 1:2386833/2‑68 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:1324010/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:1379873/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:814914/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:1142794/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:71371/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:958432/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:578750/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:1747421/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:534268/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:468730/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:1559124/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:378010/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:3102736/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:2985705/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:22133/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:2904186/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:2225678/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:2562213/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:239925/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGCTCAAt > 1:240914/2‑69 (MQ=255) taCCAGCAGGGCGACGGCCATAATCGCTGGCGTGTAAATACGGCTGAAACGGTCGATAAACCGATCAAt > 1:981530/2‑69 (MQ=255) | AATCCACTCCTGCCAGCTGGCGGCAAACAGCAGCGGTGGCACCAGCGTCACCAGCAGAGCGACGGCCATAATCGCGGGCGTATAGATACGGCTGAAACGGTCGATAAACCGCTCAAT > minE/2619596‑2619712 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |