| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,619,860 | C→A | 30.5% | P293P (CCG→CCT) | zntA ← | zinc, cobalt and lead efflux system |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,619,860 | 0 | C | A | 30.5% | 73.2 / 33.6 | 59 | P293P (CCG→CCT) | zntA | zinc, cobalt and lead efflux system |
| Reads supporting (aligned to +/- strand): ref base C (7/34); new base A (5/13); total (12/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.83e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.10e-01 | |||||||||||
TCCAACGTCACCAGACGGTCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGAGAGCA > minE/2619792‑2619915 | tCCAACGTCACCAGACGGTCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTT‑CGCGCTCCAcc > 1:3214203/1‑68 (MQ=255) aaCGTCACCAGACGGTCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCgg < 1:548657/68‑1 (MQ=255) aaCGTCACCAGACGGTCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCgg < 1:676952/68‑1 (MQ=255) aaCGTCACCAGACGGTCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCgg < 1:1528751/68‑1 (MQ=255) cACCAGACGGTCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGa < 1:1076221/69‑1 (MQ=255) cACCAGACGGTCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGa < 1:1992614/69‑1 (MQ=255) cACCAGACGGTCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGa < 1:1858112/69‑1 (MQ=255) aCCAGACGGTCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCAGTTGCGCGCTCCACCgg < 1:1940958/62‑1 (MQ=255) aGACGGTCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCgg < 1:824394/59‑1 (MQ=255) tCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTc < 1:1574109/69‑1 (MQ=255) tCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTc < 1:2435162/69‑1 (MQ=255) tCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTc < 1:689045/69‑1 (MQ=255) tCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTc < 1:2913402/69‑1 (MQ=255) tCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTc < 1:319047/69‑1 (MQ=255) tCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTc < 1:3364528/69‑1 (MQ=255) tCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTc < 1:501203/69‑1 (MQ=255) tCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTc < 1:1068257/69‑1 (MQ=255) tCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCGCCACCGGAATGGATTCGCCGGTc < 1:3148425/69‑1 (MQ=255) cTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTc < 1:1167199/68‑1 (MQ=255) agcagGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCaaa < 1:1534129/69‑1 (MQ=255) gcagGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTtc > 1:972884/1‑62 (MQ=255) gcagGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTtc > 1:2844619/1‑62 (MQ=255) gcagGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTtc > 1:1987590/1‑62 (MQ=255) gcagGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTtc > 1:2040703/1‑62 (MQ=255) gcagGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCaaa < 1:2707471/68‑1 (MQ=255) gaaCTTTATCGCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACt < 1:553/53‑1 (MQ=255) gaaCTTTATCGCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACt < 1:3240369/53‑1 (MQ=255) gaaCTTTATCGCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACt < 1:44217/53‑1 (MQ=255) gaaCTTTATCGCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACt < 1:2722409/53‑1 (MQ=255) gaaCTTTATCGCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACt < 1:2370303/53‑1 (MQ=255) gaaCTTTATCGCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACt < 1:1127068/53‑1 (MQ=255) gaaCTTTATCGCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACt < 1:1423827/53‑1 (MQ=255) gaaCTTTATCGCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACt < 1:1497406/53‑1 (MQ=255) gaaCTTTATCGCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACt < 1:797352/53‑1 (MQ=255) gaaCTTTATCGCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACt < 1:1747799/53‑1 (MQ=255) gaaCTTTATCGCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACt < 1:2428265/53‑1 (MQ=255) gaaCTTTATCGCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACt < 1:2156101/53‑1 (MQ=255) aaCTTTATCGCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACt < 1:623287/53‑1 (MQ=255) ttATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCaaa > 1:1971098/1‑59 (MQ=255) ttATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCaaa > 1:1117767/1‑59 (MQ=255) ttATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCaaa > 1:171027/1‑59 (MQ=255) gCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACTTTCATCAAAACTGGCAAACGGt > 1:193431/1‑67 (MQ=255) gCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACTTTCATCAAAACTGGCAAACGGt > 1:1485231/1‑67 (MQ=255) gCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACTTTCATCAAAACTGGCAAACGGt > 1:378190/1‑67 (MQ=255) gCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACTTTCATCAAAACTGGCAAACGGt > 1:2567298/1‑67 (MQ=255) gCCCGTCGCGCGCTCCACAGGAATGGATTCTCCGGTCAGGGCACTTTCATCAAAACTGGCAAACGGt > 1:2901632/1‑67 (MQ=255) cGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGagag < 1:88372/69‑1 (MQ=255) cGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGagag < 1:430527/69‑1 (MQ=255) cGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGagag < 1:2562924/69‑1 (MQ=255) cGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGagag < 1:2616733/69‑1 (MQ=255) cGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGagag < 1:2902593/69‑1 (MQ=255) cGTTGCGCGCTCCACCGGAATGGATTCGCAGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGagag < 1:1515002/69‑1 (MQ=255) gTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCGAACGGTGagag < 1:995350/68‑1 (MQ=255) gTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGagag < 1:500317/68‑1 (MQ=255) gTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGagag < 1:1551781/68‑1 (MQ=255) ttGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGAGAGCa < 1:2530106/69‑1 (MQ=255) ttGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGAGAGCa < 1:1654969/69‑1 (MQ=255) ttGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGAGAGCa < 1:1653409/69‑1 (MQ=255) ttGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGAGAGCa < 1:1512228/69‑1 (MQ=255) ttGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGAGAGCa < 1:1061026/69‑1 (MQ=255) ccGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACg > 1:422820/1‑48 (MQ=255) | TCCAACGTCACCAGACGGTCTACGCTGGTGGCACCAGCAGGGACTTTATCGCCCGTTGCGCGCTCCACCGGAATGGATTCGCCGGTCAGGGCGCTTTCATCAAAACTGGCAAACGGTGAGAGCA > minE/2619792‑2619915 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |