| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,624,178 | G→T | 47.2% | A411A (GCG→GCT) | ftsY → | fused Signal Recognition Particle (SRP) receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,624,178 | 0 | G | T | 47.2% | 21.5 / 73.0 | 74 | A411A (GCG→GCT) | ftsY | fused Signal Recognition Particle (SRP) receptor |
| Reads supporting (aligned to +/- strand): ref base G (9/30); new base T (10/25); total (19/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.06e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.93e-01 | |||||||||||
CAAATCGCACCTGATGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCGGGCAGAACGCGGTAAGCCAGGCCAAA > minE/2624112‑2624241 | cAAATCGCACCTGATGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAgcgc > 1:1012086/1‑68 (MQ=255)cAAATCGCACCTGATGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAgcgc > 1:2362337/1‑68 (MQ=255)cAAATCGCACCTGATGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAgcgc > 1:2166325/1‑68 (MQ=255)cAAATCGCACCTGATGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAgcgc > 1:1616478/1‑68 (MQ=255)cAAATCGCACCTGATGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAgcgc > 1:1409643/1‑68 (MQ=255)cAAATCGCACCTGATGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAgcgc > 1:934424/1‑68 (MQ=255)cAAATCGCACCTGATGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAgcgc > 1:973896/1‑68 (MQ=255)cAAATCGCACCTGATGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAgcgc > 1:935385/1‑68 (MQ=255) ccTGATGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGaatt < 1:3159177/69‑3 (MQ=255) ccTGATGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGt < 1:2381798/69‑1 (MQ=255) tGATGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAATAAACTCGACGTTGAAGCGCCGCATGAAGTTa < 1:1892437/69‑1 (MQ=255) tGATGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTa < 1:475861/69‑1 (MQ=255) aTGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGt < 1:1119124/65‑1 (MQ=255) ggAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCt < 1:2662333/69‑1 (MQ=255) gAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTg > 1:2397924/1‑69 (MQ=255) agagTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCt < 1:2198144/66‑1 (MQ=255) agagTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCt < 1:2249454/66‑1 (MQ=255) agagTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCt < 1:2598778/66‑1 (MQ=255) agagTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCt < 1:2951572/66‑1 (MQ=255) agagTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGAc < 1:979257/69‑1 (MQ=255) agagTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGAc < 1:626748/69‑1 (MQ=255) agagTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGAc < 1:2770874/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:100819/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:984780/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:281797/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:300509/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:3072883/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:3076895/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:3244936/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:3428901/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:387526/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:41331/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:547849/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:907263/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:1631048/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:1880986/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:1811203/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:1179361/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:1196557/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:2129340/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:1062063/69‑1 (MQ=255) gTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:2301214/69‑1 (MQ=255) ttGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:2634572/68‑1 (MQ=255) ttGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTAtt < 1:91716/69‑1 (MQ=255) ttGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTAtt < 1:1832368/69‑1 (MQ=255) tGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTAtt < 1:1460569/68‑1 (MQ=255) gaagaaAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTAtt < 1:1329390/67‑1 (MQ=255) agaaAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGAt > 1:1237225/1‑68 (MQ=255) agaaAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGAt > 1:576371/1‑68 (MQ=255) agaaAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGAt > 1:3073715/1‑68 (MQ=255) agaaAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGAt > 1:30552/1‑68 (MQ=255) agaaAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGAt > 1:1917018/1‑68 (MQ=255) agaaAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGAt > 1:2367645/1‑68 (MQ=255) agaaAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGAt > 1:944945/1‑68 (MQ=255) aaaaTCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTATTGATGcc > 1:1974087/1‑69 (MQ=255) aaaaTCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTATTGATGcc > 1:2622780/1‑69 (MQ=255) aaaaTCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTATTGATGcc > 1:1687968/1‑69 (MQ=255) aaaaTCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTATTGATGcc > 1:2789964/1‑69 (MQ=255) aaaaTCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTATTGATGcc > 1:2436310/1‑69 (MQ=255) aaaaTCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTATTGATGcc > 1:1139652/1‑69 (MQ=255) aaaaTCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTATTGATGcc > 1:2982666/1‑69 (MQ=255) aaaaTCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTATTGATGcc > 1:2261990/1‑69 (MQ=255) aaaaTCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTATTGATGc > 1:1191582/1‑68 (MQ=255) aaaaTCGTCCGCGTGATGAAGAAACTCGACGTT‑AAGCTCCGCATGAAGTTATGCTGACTATTGATGcc > 1:1541508/1‑68 (MQ=255) aaaTCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTa < 1:2710905/51‑1 (MQ=255) aaTCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAg < 1:656411/69‑1 (MQ=255) gTCCGCGTGATGAAGAAACTCGACGTTGAAGCTCCGCTTGAAGTTATGCTGACTAt < 1:569361/56‑1 (MQ=255) cgcgTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCggg < 1:914230/69‑1 (MQ=255) cgcgTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCggg < 1:233760/69‑1 (MQ=255) cgcgTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCggg < 1:2065859/69‑1 (MQ=255) gtagaaACTCGTCGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:15200/43‑1 (MQ=37) gaagaaACTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:891896/45‑1 (MQ=255) gaaACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCGGGCAGAACGCGGt < 1:904466/69‑1 (MQ=255) cTCGACGTTGAAGCTCCGCATGAAGTTATGCTGACTAt < 1:1828252/38‑1 (MQ=255) cTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCGGGCAGAACGCTGTAAGc < 1:2377269/69‑1 (MQ=255) cTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCGGGCAGAACGCGGTAAGc < 1:1654670/69‑1 (MQ=255) cTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCGGGCAGAACGCGGTAAGc < 1:979402/69‑1 (MQ=255) cGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCGGGCAGAACGCGGt < 1:3434235/63‑1 (MQ=255) ttGATGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCggg < 1:2013711/47‑1 (MQ=255) ttGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCGGGCAGAACGCGGTAAGCCAGGCCa < 1:1987227/69‑1 (MQ=255) ttGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCGGGCAGAACGCGGTAAGCCAGGCCa < 1:1033873/69‑1 (MQ=255) gAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCGGGCAGAACGCGGTAAGCCAGGCCaaa > 1:3092914/1‑69 (MQ=255) | CAAATCGCACCTGATGGAAGAGTTGAAGAAAATCGTCCGCGTGATGAAGAAACTCGACGTTGAAGCGCCGCATGAAGTTATGCTGACTATTGATGCCAGCACCGGGCAGAACGCGGTAAGCCAGGCCAAA > minE/2624112‑2624241 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |