| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,630,947 | A→C | 25.5% | S54S (TCA→TCC) | livH → | leucine/isoleucine/valine transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,630,947 | 0 | A | C | 25.5% | 117.8 / 48.5 | 90 | S54S (TCA→TCC) | livH | leucine/isoleucine/valine transporter subunit |
| Reads supporting (aligned to +/- strand): ref base A (30/37); new base C (15/8); total (45/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGAT > minE/2630891‑2631014 | aTCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGatcatc > 1:1981980/1‑69 (MQ=255)aTCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGatcatc > 1:2902913/1‑69 (MQ=255)aTCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGatcatc > 1:2945297/1‑69 (MQ=255)aTCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGatcatc > 1:3130716/1‑69 (MQ=255)aTCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGatcatc > 1:2403471/1‑69 (MQ=255)aTCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGatcatc > 1:1452559/1‑69 (MQ=255)aTCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGatcatc > 1:1445210/1‑69 (MQ=255)aTCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGatcatc > 1:1397094/1‑69 (MQ=255)aTCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTAAGatcatc > 1:3378269/1‑69 (MQ=255) aTCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtg > 1:3097999/1‑69 (MQ=255) aTCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtg > 1:339037/1‑69 (MQ=255) aTCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtg > 1:1508125/1‑69 (MQ=255) aTCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtg > 1:734193/1‑69 (MQ=255) aTCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtg > 1:2593643/1‑69 (MQ=255) aTCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtg > 1:2995093/1‑69 (MQ=255) aTCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtg > 1:981489/1‑69 (MQ=255) aTCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtg > 1:2938531/1‑69 (MQ=255) cAACTTCGCCCACGGCGAGGTTTACATGATTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACtgat < 1:1044161/69‑1 (MQ=255) cAACTTCGCCCACGGCGAGGTTTACATGATTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACtgat < 1:2394591/69‑1 (MQ=255) cAACTTCGCCCACGGCGAGGTTTACATGATTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACtgat < 1:2126883/69‑1 (MQ=255) cAACTTCGCCCACGGCGAGGTTTACATGATTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACtgat < 1:3049012/69‑1 (MQ=255) cAACTTCGCCCACGGCGAGGTTTACATGATTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACtgat < 1:1637790/69‑1 (MQ=255) cAACTTCGCCCACGGCGAGGTTTACATGATTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACtgat < 1:1184540/69‑1 (MQ=255) aaCTTCGCCCACGGCGAGGTTTACATGATTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACtgat < 1:2907083/68‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:3267197/69‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:992384/69‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:109306/69‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:275136/69‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:2662906/69‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:2621891/69‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:2617699/69‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:249750/69‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:2482393/69‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:2409169/69‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:128597/69‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:1927477/69‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:2303592/69‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:2151821/69‑1 (MQ=255) cTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGGCTCATTTATGATCATCGCCGAGCtgatgat < 1:2502932/69‑1 (MQ=255) ttCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:2679447/68‑1 (MQ=255) ttCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:3202010/68‑1 (MQ=255) ttCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:1363191/68‑1 (MQ=255) ttCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:398444/68‑1 (MQ=255) aCGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCtgatgat < 1:1273050/61‑1 (MQ=255) cGGCGAGGTTTACATGATTGGCAGCTACGGCTCCTTTATGATCATCGCCGCACtgat < 1:875508/57‑1 (MQ=255) ggCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCt > 1:1837532/1‑53 (MQ=255) ggCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCt > 1:2251998/1‑53 (MQ=255) ggCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCt > 1:2360659/1‑53 (MQ=255) ggCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCt > 1:3127952/1‑53 (MQ=255) ggCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCt > 1:3333336/1‑53 (MQ=255) ggCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCt > 1:289466/1‑53 (MQ=255) ggCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCAtt < 1:1046061/69‑1 (MQ=255) ggCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCAtt < 1:3108210/69‑1 (MQ=255) ggCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCAtt < 1:928406/69‑1 (MQ=255) ggCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCAtt < 1:3072131/69‑1 (MQ=255) gaagTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGAt < 1:3253309/66‑1 (MQ=255) gAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGTATTGAt < 1:4082/69‑1 (MQ=255) gAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGAt < 1:1051147/69‑1 (MQ=255) gAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGAt < 1:98237/69‑1 (MQ=255) gAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGAt < 1:235270/69‑1 (MQ=255) gAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGAt < 1:519569/69‑1 (MQ=255) gAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGAt < 1:2078186/69‑1 (MQ=255) gAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGAt < 1:1660335/69‑1 (MQ=255) gAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGAt < 1:3152258/69‑1 (MQ=255) gAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGAt < 1:3167934/69‑1 (MQ=255) gAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGAt < 1:3183665/69‑1 (MQ=255) aGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGAt < 1:2021063/68‑1 (MQ=255) tataTGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGATACCggc > 1:1876237/1‑69 (MQ=255) tataTGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGATACCggc > 1:779191/1‑69 (MQ=255) tataTGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGATACCggc > 1:1905824/1‑69 (MQ=255) tataTGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGATACCggc > 1:3087002/1‑69 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACTGATGATGCTGGGCATTTATACCggct > 1:2720586/1‑64 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACTGATGATGCTGGGCATTGATa > 1:1186972/1‑58 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACTGATGATGCTGGGCATTGATACCggct > 1:567453/1‑64 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACTGATGATGCTGGGCATTGATACCggct > 1:1142270/1‑64 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACTGATGATGCTGGGCATTGATACCggct > 1:2631331/1‑64 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACTGATGATGCTGGGCATTGATACCggct > 1:600447/1‑64 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACTGATGATGCTGGGCATTGATACCggct > 1:21452/1‑64 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACTGATGATGCTGGGCATTGATACCggct > 1:1611945/1‑64 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACTGATGATGCTGGGCATTGATACCggct > 1:1630013/1‑64 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACTGATGATGCTGGGCATTGATACCggct > 1:3113535/1‑64 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACTGATGATGCTGGGCATTGATACCggct > 1:1722104/1‑64 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACTGATGATGCTGGGCATTGATACCggct > 1:286924/1‑64 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACTGATGATGCTGGGCATTGATACCggct > 1:3132894/1‑64 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGATCATCGCCGCACTAATGATGCTGGGCATTGATACCggct > 1:1433893/1‑64 (MQ=255) aTTGGCAGCTACGTCTCCTTTATGAACATCGCCGCACTGATGATGCTGGGCATTGATACCggc > 1:1326340/1‑63 (MQ=255) gCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCAtt < 1:690985/50‑1 (MQ=255) cATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGAt > 1:2969840/1‑69 (MQ=255) cATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGAt > 1:645766/1‑69 (MQ=255) cATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGAt > 1:2077674/1‑69 (MQ=255) | ATCGGCATGATCAACTTCGCCCACGGCGAGGTTTATATGATTGGCAGCTACGTCTCATTTATGATCATCGCCGCGCTGATGATGATGGGCATTGATACCGGCTGGCTGCTGGTAGCTGCGGGAT > minE/2630891‑2631014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |