Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 2,631,436 G→A 59.0% A217A (GCG→GCA livH → leucine/isoleucine/valine transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,631,4360GA59.0% 10.1 / 26.5 39A217A (GCG→GCAlivHleucine/isoleucine/valine transporter subunit
Reads supporting (aligned to +/- strand):  ref base G (9/7);  new base A (9/14);  total (18/21)
Fisher's exact test for biased strand distribution p-value = 3.42e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01

AACACCGACCGGGTGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCGGTGGCGGGTGTGCTGCTCGGTCAGTTCTACGGCGTCATTAACCCCTACATC  >  minE/2631383‑2631487
                                                     |                                                   
aaCACCGACCGGGTGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCGGTGGCGGGTGtgctg                                      >  1:1466967/1‑69 (MQ=255)
aaCACCGACCGGGTGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCGGTGGCGGGTGtgctg                                      >  1:1778434/1‑69 (MQ=255)
aaCACCGACCGGGTGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCGGTGGCGGGTGtgct                                       >  1:2354997/1‑68 (MQ=255)
aaCACCGACCGGGTGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCGGGGGCGGGTGtgctg                                      >  1:392033/1‑69 (MQ=255)
  cacCGACCGGGTGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCGGTGGCGGGTGTgctgct                                    >  1:359788/1‑69 (MQ=255)
  cacCGACCGGGTGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCGGTGGCGGGTGTgctgct                                    >  1:1441347/1‑69 (MQ=255)
  cacCGACCGGGTGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCGGTGGCGGGTGTgctgct                                    >  1:1523458/1‑69 (MQ=255)
            gTGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCGGTGGCGGGTGTGCTGCTCGGTCAGTTc                          <  1:1570669/69‑1 (MQ=255)
            gTGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCGGTGGCGGGTGTGCTGCTCGGTCAGTTc                          <  1:1922934/69‑1 (MQ=255)
            gTGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCGGTGGCGGGTGTGCTGCTCGGTCAGTTc                          <  1:1883463/69‑1 (MQ=255)
             tGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCgggcg                                           <  1:2691686/51‑3 (MQ=255)
             tGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCgggcg                                           <  1:3328819/51‑3 (MQ=255)
             tGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCgggcg                                           <  1:387782/51‑3 (MQ=255)
             tGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCgggcg                                           <  1:3017668/51‑3 (MQ=255)
             tGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCgggcg                                           <  1:443530/51‑3 (MQ=255)
             tGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCgggcg                                           <  1:608566/51‑3 (MQ=255)
             tGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCgggcg                                           <  1:3193364/51‑3 (MQ=255)
             tGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCgggcg                                           <  1:78340/51‑3 (MQ=255)
             tGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCgggcg                                           <  1:1886195/51‑3 (MQ=255)
             tGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCgggcg                                           <  1:1467324/51‑3 (MQ=255)
             tGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCgggcg                                           <  1:1436733/51‑3 (MQ=255)
             tGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCgggcg                                           <  1:1011825/51‑3 (MQ=255)
             tGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCgggcg                                           <  1:1070223/51‑3 (MQ=255)
             tGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCAGTGACgggcg                                           <  1:2159344/51‑3 (MQ=255)
                          cTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCGGGCGTGCTGCTCGGTCAGTTCTACGGCGTAATTaa            >  1:525814/1‑69 (MQ=255)
                          cTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCGGGCGTGCTGCTCGGTCAGTTCTACGGCGTAATTaa            >  1:833459/1‑69 (MQ=255)
                          cTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCGGGCGTGCTGCTCGGTCAGTTCTACGGCGTAATTaa            >  1:860655/1‑69 (MQ=255)
                          cTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCGGGCGTGCTGCTCGGTCAGTTCTACGGCGTAATTaa            >  1:3137677/1‑69 (MQ=255)
                          cTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCGGGCGTGCTGCTCGGTCAGTTCTACGGCGTAATTaa            >  1:2534406/1‑69 (MQ=255)
                          cTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCGGGCGTGCTGCTCGGTCAGTTCTACGGCGTAATTaa            >  1:2447617/1‑69 (MQ=255)
                          cTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCGGGCGTGCTGCTCGGTCAGTTCTACGGCGTAATTaa            >  1:2347726/1‑69 (MQ=255)
                          cTTTGTGATTGGCGCGGCGATGGCGGCAGTGGCGGGCGTGCTGCTCGGTCAGTTCTACGGCGTAATTaa            >  1:1648825/1‑69 (MQ=255)
                          cTTTGTGAATGGCGCGGCGATGGCGGCAGTGGCGGGCGTGCTGCTCGGTCAGTTCTACGGCGTAATTaa            >  1:1134306/1‑69 (MQ=255)
                               tgATTGGCGCGGCGATGGCGGCGGTGGCGGGTGTGCTGCTCGGTCAGTTCTACGGCGTCATTAAcccc        <  1:2598829/68‑1 (MQ=255)
                               tgATTGGCGCGGCGATGGCGGCGGTGGCGGGTGTGCTGCTCGGTCAGTTCTACGGCGTCATTAAcccc        <  1:40916/68‑1 (MQ=255)
                               tgATTGGCGCGGCGATGGCGGCGGTGGCGGGTGTGCTGCTCGGTCAGTTCTACGGCGTCATTAAcccc        <  1:44496/68‑1 (MQ=255)
                               tgATTGGCGCGGCGATGGCGGCGGTGGCGGGTGTGCTGCTCGGTCAGTTCTACGGCGTCATTAAcccc        <  1:2434720/68‑1 (MQ=255)
                                    ggCGCGGCGATGGCGGCGGTGGCGGGTGTGCTGCTCGGTCAGTTCTACGGCGTCATTAACCCCTACATc  >  1:2781440/1‑69 (MQ=255)
                                    ggCGCGGCGATGGCGGCGGTGGCGGGTGTGCTGCTCGGTCAGTTCTACGGCGTCATTAACCCCTACATc  >  1:404267/1‑69 (MQ=255)
                                                     |                                                   
AACACCGACCGGGTGATTGCGCTGACCTTTGTGATTGGCGCGGCGATGGCGGCGGTGGCGGGTGTGCTGCTCGGTCAGTTCTACGGCGTCATTAACCCCTACATC  >  minE/2631383‑2631487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: