| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,637,188 | G→A | 68.1% | T9T (ACG→ACA) | ugpE → | glycerol‑3‑phosphate transporter subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,637,188 | 0 | G | A | 68.1% | 113.2 / 65.0 | 125 | T9T (ACG→ACA) | ugpE | glycerol‑3‑phosphate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base G (24/16); new base A (33/52); total (57/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.44e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.69e-01 | |||||||||||
Only 100 of 128 total aligned reads displayed.
GTGCAGTTCCGCTATGTTGAAAGCAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGATCCTCTTCCCGCTGTACGTGGCGTTTGT > minE/2637124‑2637256 | gtgCAGTTCCGCTATGTTGAAAGCAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGatat < 1:1079891/69‑1 (MQ=255)gtgCAGTTCCGCTATGTTGAAAGCAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGa > 1:1171506/1‑66 (MQ=255)gcgCAGTTCCGCTATGTTGAAAGCAAGGGGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGatat < 1:3354505/67‑1 (MQ=255) gCAGTTCCGCTATGTTGAAAGCAAGGTACGTTACC‑ATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:295943/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:1998699/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:1735633/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:344382/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:1644233/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:3255807/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:1783685/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:1511660/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:324744/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:3178882/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:2030689/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:2767919/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:2692415/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:573790/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:2683645/69‑1 (MQ=255) cAGTTCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCa < 1:2656014/69‑1 (MQ=255) gTTCCGCTATGTTGAAAGCAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGc < 1:1140048/69‑1 (MQ=255) tCCGCTATGTTGAAAGCAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCa > 1:2554838/1‑69 (MQ=255) tCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCa < 1:1723964/69‑1 (MQ=255) tCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCa < 1:2167269/69‑1 (MQ=255) tCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCa < 1:2482268/69‑1 (MQ=255) tCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCa < 1:1870471/69‑1 (MQ=255) tCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCa < 1:503769/69‑1 (MQ=255) tCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCa < 1:1478033/69‑1 (MQ=255) tCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCa < 1:1287562/69‑1 (MQ=255) tCCGCTATGTTGAAAGCAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCa < 1:1385185/69‑1 (MQ=255) ccGCTATGTTGAAAGCAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCAt < 1:2204758/69‑1 (MQ=255) ttGAAAGCAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCt > 1:2357084/1‑69 (MQ=255) ttGAAAGCAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCt > 1:2134500/1‑69 (MQ=255) gAAAGCAAGGTGCGTTACCAATGATTGAGAACCGACCGTGGCTGACGATATTCAGCCATACCATGCTGa > 1:551404/1‑69 (MQ=255) cAAGGTGCGTTACCAATGATTGATAACCGTCCGAGGCTGACGATAtta > 1:2853547/1‑47 (MQ=255) cAAGGTGCGTTACCAATGATTGAGACCCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTc > 1:2091064/1‑69 (MQ=255) cAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTc > 1:239438/1‑69 (MQ=255) cAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTc > 1:120045/1‑69 (MQ=255) cAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTc > 1:2771041/1‑69 (MQ=255) cAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTc > 1:2532896/1‑69 (MQ=255) cAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTc > 1:3417591/1‑69 (MQ=255) cAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTc > 1:2068343/1‑69 (MQ=255) cAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTc > 1:2064330/1‑69 (MQ=255) cAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTc > 1:519378/1‑69 (MQ=255) cAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTc > 1:2999676/1‑69 (MQ=255) cAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTc > 1:1601172/1‑69 (MQ=255) cAAGGTGCGTTACCAATGATTGAGAACCGTACGTGGCTGACGATATTCAGCCATACCAt > 1:2802841/1‑59 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:2755414/69‑1 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:2960289/69‑1 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:882813/69‑1 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:1005488/69‑1 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:443224/69‑1 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:2558760/69‑1 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:96800/69‑1 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:1708249/69‑1 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:1981381/69‑1 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:1980279/69‑1 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:1931440/69‑1 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:2331301/69‑1 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:2427355/69‑1 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:1382847/69‑1 (MQ=255) cAAGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:1198930/69‑1 (MQ=255) aaGGTACGTTACCAATGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTc < 1:2943356/68‑1 (MQ=255) gCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTCGGGATc > 1:25959/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTTATCCTCGGGATCGCGGTGa < 1:229012/68‑1 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGa < 1:1485940/68‑1 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGa < 1:2588399/68‑1 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGa < 1:1917316/68‑1 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGa < 1:68467/68‑1 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGa < 1:3023620/68‑1 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGa < 1:707743/68‑1 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGAt > 1:2282698/1‑60 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGa > 1:2863359/1‑68 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:1435887/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:1014920/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:965150/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:952610/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:11042/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:876309/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:875649/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:8747/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:2552/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:2478033/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:633872/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:2669860/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:2461944/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:2958460/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:513447/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:2713214/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:1622019/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:1673970/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:1681322/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:1760978/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:3213647/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:2110587/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:1933304/1‑69 (MQ=255) aaTGATTGAGAACCGTCCGTGGCTGACAATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGAt > 1:2875864/1‑69 (MQ=255) aTTGAGAACCGTCCGTGGCTGACGATATTCAGCCATa > 1:791216/1‑37 (MQ=255) aTTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCtt < 1:712770/45‑2 (MQ=255) gATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGATCCTCTTCCCGCTGTACGTGGCGTTTGt > 1:370683/1‑69 (MQ=255) gATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGATCCTCTTCCCGCTGTACGTGGCGTTTGt > 1:2344607/1‑69 (MQ=255) | GTGCAGTTCCGCTATGTTGAAAGCAAGGTGCGTTACCAATGATTGAGAACCGTCCGTGGCTGACGATATTCAGCCATACCATGCTGATCCTCGGGATCGCGGTGATCCTCTTCCCGCTGTACGTGGCGTTTGT > minE/2637124‑2637256 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |