| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,642,710 | C→A | 42.8% | S114S (TCC→TCA) | gntR → | DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,642,710 | 0 | C | A | 42.8% | 52.1 / 90.9 | 100 | S114S (TCC→TCA) | gntR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base C (42/15); new base A (19/23); total (61/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.28e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.97e-01 | |||||||||||
ATCAGACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGATCCTCACCGAACGTACCCACAC > minE/2642649‑2642760 | aTCAAACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGctct < 1:2165931/69‑1 (MQ=255)aTCAAACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGctct < 1:962021/69‑1 (MQ=255)aTCAAACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGctct < 1:405906/69‑1 (MQ=255)aTCAAACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGctct < 1:344418/69‑1 (MQ=255)aTCAAACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGctct < 1:2877488/69‑1 (MQ=255)aTCAAACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGctct < 1:2651832/69‑1 (MQ=255)aTCAAACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGctct < 1:2555867/69‑1 (MQ=255)aTCAAACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGctct < 1:2400640/69‑1 (MQ=255)aTCAAACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGctct < 1:2349502/69‑1 (MQ=255)aTCAAACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGctct < 1:1937830/69‑1 (MQ=255)aTCAAACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGctct < 1:1908936/69‑1 (MQ=255)aTCAAACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGctct < 1:1892160/69‑1 (MQ=255)aTCAAACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGctct < 1:1890639/69‑1 (MQ=255) aGACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCt < 1:1008314/69‑1 (MQ=255) aGACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCt < 1:869301/69‑1 (MQ=255) aGACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCt < 1:1489990/69‑1 (MQ=255) aGACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCt < 1:1046324/69‑1 (MQ=255) aGACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCt < 1:3295490/69‑1 (MQ=255) aGACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCt < 1:2766302/69‑1 (MQ=255) aGACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCt < 1:1003979/69‑1 (MQ=255) aGACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCt < 1:1267906/69‑1 (MQ=255) aCCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCGATGCTCTCATgg < 1:908837/69‑1 (MQ=255) aCCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGCTCTCATgg < 1:1437801/69‑1 (MQ=255) aCCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGCTCTCATgg < 1:1442107/69‑1 (MQ=255) aCCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGCTCTCATgg < 1:498392/69‑1 (MQ=255) aCCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGCTCTCATgg < 1:2954329/69‑1 (MQ=255) aCCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGCTCTCATgg < 1:2500203/69‑1 (MQ=255) ccATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGCTCTCATgg < 1:137622/68‑1 (MQ=255) ccATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGa < 1:3274113/69‑1 (MQ=255) ccATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGa < 1:2911980/69‑1 (MQ=255) ccATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGa < 1:2730021/69‑1 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:1069082/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:2252848/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:1201063/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:2500819/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:2600194/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:265512/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:1614683/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:2822448/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:1732831/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:2945047/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:3211087/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:3335722/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:147628/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:1408603/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:203879/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:1729773/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:1892637/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:1850644/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:1993772/1‑69 (MQ=255) cTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:1806915/1‑69 (MQ=255) cTGGAGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATc > 1:2079242/1‑69 (MQ=255) cACTACGGTTATAAACTGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGc < 1:3185965/69‑1 (MQ=255) cACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGc < 1:3240559/69‑1 (MQ=255) cACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGc < 1:3236611/69‑1 (MQ=255) aCGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa > 1:1144153/1‑69 (MQ=255) aCGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa > 1:2384644/1‑69 (MQ=255) aCGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa > 1:2600287/1‑69 (MQ=255) aCGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa > 1:2628744/1‑69 (MQ=255) aCGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa > 1:414058/1‑69 (MQ=255) aCGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa > 1:1576353/1‑69 (MQ=255) aCGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa > 1:509463/1‑69 (MQ=255) aCGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa > 1:1293481/1‑69 (MQ=255) aCGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGATCTCCTGGAATATCGACGGCCTGa > 1:1572591/1‑69 (MQ=255) aCGGTTATAAACCGGAAATGGAGAAAGAACGCCTCGAATCCATGc > 1:810953/1‑45 (MQ=255) cGGAAATGGAGCAAGAACGCCTCGAATCAATGctct < 1:2967248/36‑1 (MQ=255) aaTGGCGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:2072095/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCTAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:2855905/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTGTCATGGAATATCGACGGCCTGATCCTCActg > 1:2934031/1‑60 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACgg > 1:2164016/1‑48 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGt > 1:270975/1‑67 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:2890563/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:1333670/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:2146787/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:64977/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:358722/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:1541996/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:1675452/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:1982351/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:1091167/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:1300651/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:1713326/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:1964037/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCGAATCAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGAACGTa > 1:1811745/1‑68 (MQ=255) aaTGGAGCAAGAACGCCTCGAAACAATGCTCTCATGGAATATCGACGGCCTGATCCTCACTGa > 1:855479/1‑63 (MQ=255) tGGAGGAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa > 1:1321937/1‑51 (MQ=255) tGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa > 1:2013043/1‑51 (MQ=255) tGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa < 1:2878295/51‑1 (MQ=255) tGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa < 1:1681309/51‑1 (MQ=255) tGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa > 1:2959998/1‑51 (MQ=255) tGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa > 1:1789164/1‑51 (MQ=255) tGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa < 1:3333409/51‑1 (MQ=255) tGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa > 1:1110091/1‑51 (MQ=255) gAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGATCCTCACCGAACGTACCcac > 1:489796/1‑69 (MQ=255) gAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGATCCTCACCGAACGTACCcac > 1:1748849/1‑69 (MQ=255) gAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGATCCTCACCGAACGTACCcac > 1:3284195/1‑69 (MQ=255) gAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGATCCTCACCGAACGTACCcac > 1:1988492/1‑69 (MQ=255) gAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGATCCTCACCGAACGTACCca > 1:957664/1‑68 (MQ=255) gCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGATCCTCACCGAACGTACCCacac > 1:1441271/1‑69 (MQ=255) gCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGa < 1:1040269/39‑1 (MQ=255) | ATCAGACCATGCTGGCGCACTACGGTTATAAACCGGAAATGGAGCAAGAACGCCTCGAATCCATGCTCTCCTGGAATATCGACGGCCTGATCCTCACCGAACGTACCCACAC > minE/2642649‑2642760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |