| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,643,149 | C→T | 34.7% | L261L (CTG→TTG) | gntR → | DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,643,149 | 0 | C | T | 34.7% | 67.6 / 51.1 | 92 | L261L (CTG→TTG) | gntR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base C (14/46); new base T (27/5); total (41/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.59e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGCAGCTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACGGTCATGACATTGGTCAGGTGA > minE/2643081‑2643215 | cGCAGCTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTc < 1:2499561/69‑1 (MQ=255)cGCAGCTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTc < 1:2308536/69‑1 (MQ=255)cGCAGCTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTc < 1:1206248/69‑1 (MQ=255)cGCAGCTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTc < 1:1215449/69‑1 (MQ=255)cGCAGCTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTc < 1:2388210/69‑1 (MQ=255) gCAGCTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTc < 1:3296946/68‑1 (MQ=255) cTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTggg > 1:2263507/1‑68 (MQ=255) cTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTggg > 1:2514866/1‑68 (MQ=255) cTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTggg > 1:3114869/1‑68 (MQ=255) cTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTggg > 1:2380239/1‑68 (MQ=255) cTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTggg > 1:4597/1‑68 (MQ=255) cTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTggg > 1:1909568/1‑68 (MQ=255) cTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTggg > 1:1286646/1‑68 (MQ=255) cTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTggg > 1:606541/1‑68 (MQ=255) cTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTggg > 1:1127343/1‑68 (MQ=255) cTGGATGGCGTGTTCTGTACGAATGATCACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTggg > 1:2353820/1‑68 (MQ=255) tGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTaaa < 1:3268859/69‑1 (MQ=255) tgtTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTc < 1:588323/54‑1 (MQ=255) gTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGAc < 1:1910802/68‑1 (MQ=255) gTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGAc < 1:2883095/68‑1 (MQ=255) cgtatgatgACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:87493/64‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:2722124/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:2894190/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:2982307/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:2459356/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:2434823/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:3243197/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:3245259/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:45533/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:544936/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:609865/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:720936/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:1051287/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:1834382/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:1605358/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:2005725/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:162038/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:1397360/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:1898219/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:1282452/67‑1 (MQ=255) cGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:1622150/67‑1 (MQ=255) aaTGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTTTGGGGTTAAAAGt > 1:2084875/1‑56 (MQ=255) aaTGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTTTGGGGTTAAAAGTTCCTGCCGATATg > 1:2990037/1‑69 (MQ=255) aaTGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTTTGGGGTTAAAAGTTCCTGACGatat > 1:2356936/1‑68 (MQ=255) aaTGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTTTGGGGTTAAAAGTTCCTGACGatat > 1:2361003/1‑68 (MQ=255) aaTGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTTTGGGGTTAAAAGTTCCTGACGATATg > 1:906561/1‑69 (MQ=255) aaTGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTTTGGGGTTAAAAGTTCCTGACGATATg > 1:388212/1‑69 (MQ=255) aaTGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTTTGGGGTTAAAAGTTCCTGACGATATg > 1:3079155/1‑69 (MQ=255) aaTGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTTTGGGGTTAAAAGTTCCTGACGATATg > 1:903408/1‑69 (MQ=255) gatgaCCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:721520/62‑1 (MQ=255) gatgaCCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGTCg < 1:2961768/69‑1 (MQ=255) gatgaCCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCg < 1:3323594/69‑1 (MQ=255) gatgaCCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCg < 1:3011365/69‑1 (MQ=255) gatgaCCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCg < 1:2599945/69‑1 (MQ=255) gatgaCCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCg < 1:2558403/69‑1 (MQ=255) gatgaCCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCg < 1:2553240/69‑1 (MQ=255) gatgaCCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCg < 1:1441973/69‑1 (MQ=255) gatgaCCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCg < 1:551169/69‑1 (MQ=255) gatgaCCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCg < 1:1280609/69‑1 (MQ=255) gatgaCCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCg < 1:2300334/69‑1 (MQ=255) gatgaCCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCg < 1:708268/69‑1 (MQ=255) atgaCCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCg < 1:3146923/68‑1 (MQ=255) cGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGa < 1:156384/52‑1 (MQ=255) gTCGGCGCGGCGTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTc < 1:597032/69‑1 (MQ=255) gTCGGCGCGGCGTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTc < 1:2054812/69‑1 (MQ=255) tCGGCGCGGCGTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTc < 1:2724968/68‑1 (MQ=255) ggcgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTc < 1:2667721/66‑1 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGatat > 1:621809/1‑48 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:1860222/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:2027354/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:2073124/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:900656/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:828313/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:635630/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:603732/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:187292/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:1864250/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:1514715/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:1814975/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:3137323/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:2927317/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:3351024/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:1803385/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:1657455/1‑68 (MQ=255) cgcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGAGATTGCCGGTTTCCACg > 1:747139/1‑68 (MQ=255) cgcggcgTTTGAATATCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACg > 1:1014453/1‑68 (MQ=39) gcggcgTTTGAATGTCAGCGTTTGGGGTTGAAAGTTCCTGACGATATGGCGATTGCCGGTTTc < 1:318421/63‑1 (MQ=255) gTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACGGTCATGa > 1:2353999/1‑69 (MQ=255) gTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACGGTCATGa > 1:1994381/1‑69 (MQ=255) tttGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACGGTCATGAc < 1:1661573/69‑1 (MQ=255) tttGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACGGTCATGAc < 1:3407873/69‑1 (MQ=255) tGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACGGTCATGACAt > 1:1666587/1‑69 (MQ=255) cAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACGGTCATGACATTGGTCAg > 1:2299486/1‑69 (MQ=255) gTCTGGGGTTAAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACGGTCATGACATTGGTCAGGTGa < 1:1167610/69‑1 (MQ=255) gTCTGGGGTTAAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACGGTCATGACATTGGTCAGGTGa < 1:2103445/69‑1 (MQ=255) gTCTGGGGTTAAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACGGTCATGACATTGGTCAGGTGa < 1:1697455/69‑1 (MQ=255) gTCTGGGGTTAAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACGGTCATGACATTGGTCAGGTGa < 1:1811023/69‑1 (MQ=255) gTCTGGGGTTAAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACGGTCATGACATTGGTCAGGTGa < 1:1851831/69‑1 (MQ=255) tCTGGGGTTAAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACGGTCATGACATTGGTCAGGTGa < 1:3411230/68‑1 (MQ=255) | CGCAGCTGGATGGCGTGTTCTGTACGAATGATGACCTGGCGGTCGGCGCGGCGTTTGAATGTCAGCGTCTGGGGTTAAAAGTTCCTGACGATATGGCGATTGCCGGTTTCCACGGTCATGACATTGGTCAGGTGA > minE/2643081‑2643215 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |