Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 2,665,357 A→G 24.9% D885D (GAT→GAC) ‡ malT ← DNA‑binding transcriptional activator, maltotriose‑ATP‑binding

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE2,665,3570AG24.9% 128.3 / 39.4 108D885D (GAT→GAC) ‡malTDNA‑binding transcriptional activator, maltotriose‑ATP‑binding
Reads supporting (aligned to +/- strand):  ref base A (65/16);  new base G (3/24);  total (68/40)
Fisher's exact test for biased strand distribution p-value = 1.55e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.76e-01

Only 100 of 108 total aligned reads displayed.

ATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGATGGTGGTTGCC  >  minE/2665294‑2665423
                                                               |                                                                  
aTCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTg                                                               >  1:1732637/1‑69 (MQ=255)
   cGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGc                                                             <  1:2129656/68‑1 (MQ=255)
   cGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGc                                                             <  1:2782936/68‑1 (MQ=255)
   cGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGc                                                             <  1:1649391/68‑1 (MQ=255)
   cGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGc                                                             <  1:1024902/68‑1 (MQ=255)
   cGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGc                                                             <  1:1144880/68‑1 (MQ=255)
   cGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGc                                                             <  1:570839/68‑1 (MQ=255)
   cGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGc                                                             <  1:725851/68‑1 (MQ=255)
   cGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGc                                                             <  1:890079/68‑1 (MQ=255)
     gCTAAACTCATACCCCATATCCCATCATCTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACgg                                                           <  1:1945723/68‑2 (MQ=255)
     gCTAAACTCATACCCCATATCCCATCATCTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACgg                                                           <  1:2707552/68‑2 (MQ=255)
     gCTAAACTCATACCCCATATCCCATCATCTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACgg                                                           <  1:1791215/68‑2 (MQ=255)
     gCTAAACTCATACCCCATATCCCATCATCTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACgg                                                           <  1:2379452/68‑2 (MQ=255)
     gCTAAACTCATACCCCATATCCCATCATCTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACgg                                                           <  1:194468/68‑2 (MQ=255)
     gCTAAACTCATACCCCATATCCCATCATCTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACgg                                                           <  1:1704605/68‑2 (MQ=255)
     gCTAAACTCATACCCCATATCCCATCATCTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACgg                                                           <  1:1506022/68‑2 (MQ=255)
     gCTAAACTCATACCCCATATCCCATCATCTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACgg                                                           <  1:1932438/68‑2 (MQ=255)
     gCTAAACTCATACCCCATATCCCATCATCTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACgg                                                           <  1:1048767/68‑2 (MQ=255)
     gCTAAACTCATACCCCATATCCCATCATCTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACgg                                                           <  1:762517/68‑2 (MQ=255)
     gCTAAACTCATACCCCATATCCCATCATCTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACgg                                                           <  1:491976/68‑2 (MQ=255)
     gCTAAACTCATACCCCATATCCCATCATCTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACgg                                                           <  1:1294302/68‑2 (MQ=255)
                        ccccATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCt                                        >  1:1842754/1‑68 (MQ=255)
                        ccccATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCt                                        >  1:2871536/1‑68 (MQ=255)
                        ccccATCATCTTCAGCAATTGCTGGGCGTGTTGTACAGCATCCTGGCGATGGGCCACGCCGAGTTTCt                                        >  1:1445987/1‑68 (MQ=255)
                            atcatcTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACGGTGGGCGACACCGAGTTTTTGGTa                                    <  1:1319307/68‑1 (MQ=255)
                            atcatcTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACGGTGGGCGACACCGAGTTTTTGGTa                                    <  1:443434/68‑1 (MQ=255)
                            atcatcTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACGGTGGGCGACACCGAGTTTTTGGTa                                    <  1:1797706/68‑1 (MQ=255)
                            atcatcTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACGGTGGGCGACACCGAGTTTTTGGTa                                    <  1:1269250/68‑1 (MQ=255)
                            atcatcTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACGGTGGGCGACACCGAGTTTTTGGTa                                    <  1:2948262/68‑1 (MQ=255)
                            atcatcTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACGGTGGGCGACACCGAGTTTTTGGTa                                    <  1:1452124/68‑1 (MQ=255)
                            atcatcTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACGGTGGGCGACACCGAGTTTTTGGTa                                    <  1:2811563/68‑1 (MQ=255)
                            atcatcTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACGGTGGGCGACACCGAGTTTTTGGTa                                    <  1:1600158/68‑1 (MQ=255)
                            atcatcTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACGGTGGGCGACACCGAGTTTTTGGTa                                    <  1:1554729/68‑1 (MQ=255)
                            atcatcTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACGGTGGGCGACACCGAGTTTTTGGTa                                    <  1:1545065/68‑1 (MQ=255)
                            atcatcTTCAGCAGTTTCTGCGCGTGTTGTACCGCGGCCTGACGGTGGGCGACACCGAGTTTTTGGTa                                    <  1:2460325/68‑1 (MQ=255)
                             tcatcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACa                                  <  1:2526082/69‑1 (MQ=255)
                             tcatcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACa                                  <  1:2232645/69‑1 (MQ=255)
                             tcatcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACa                                  <  1:1878680/69‑1 (MQ=255)
                               atcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTTGCGATGGGCCACGCCGAGTTTCTGATACAGa                                >  1:784675/1‑69 (MQ=255)
                               atcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGa                                >  1:1446456/1‑69 (MQ=255)
                               atcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGa                                >  1:1126223/1‑69 (MQ=255)
                               atcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGa                                >  1:2795603/1‑69 (MQ=255)
                               atcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGa                                >  1:2412783/1‑69 (MQ=255)
                               atcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGa                                >  1:358732/1‑69 (MQ=255)
                               atcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGa                                >  1:1096322/1‑69 (MQ=255)
                               atcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGa                                >  1:3376257/1‑69 (MQ=255)
                               atcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGa                                >  1:1769356/1‑69 (MQ=255)
                               atcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGa                                >  1:1816850/1‑69 (MQ=255)
                               atcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGa                                >  1:3354110/1‑69 (MQ=255)
                               atcTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGa                                >  1:1915510/1‑69 (MQ=255)
                                 cTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCCCGCCGAGTTTCTGATACAGAtt                              >  1:3065816/1‑69 (MQ=255)
                                 cTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGAtt                              >  1:2075353/1‑69 (MQ=255)
                                 cTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGAtt                              >  1:3324128/1‑69 (MQ=255)
                                 cTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGAtt                              >  1:2267119/1‑69 (MQ=255)
                                 cTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGAtt                              >  1:1082973/1‑69 (MQ=255)
                                 cTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGAtt                              >  1:1865261/1‑69 (MQ=255)
                                 cTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGAtt                              >  1:922779/1‑69 (MQ=255)
                                 cTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGAtt                              >  1:2520122/1‑69 (MQ=255)
                                 cTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGAtt                              >  1:2525510/1‑69 (MQ=255)
                                       cAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGa                         <  1:1972457/68‑1 (MQ=255)
                                           tGCTGGGCGTGTTTTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGc                    >  1:1540702/1‑69 (MQ=255)
                                           tGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATTCAGATTGCGGATATGc                    >  1:816707/1‑69 (MQ=255)
                                           tGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGc                    >  1:1760018/1‑69 (MQ=255)
                                           tGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGc                    >  1:2246659/1‑69 (MQ=255)
                                           tGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGc                    >  1:2949824/1‑69 (MQ=255)
                                           tGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGc                    >  1:2032703/1‑69 (MQ=255)
                                           tGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGc                    >  1:3200593/1‑69 (MQ=255)
                                            gCTGGGCGTGTTGTACCGCATCCTGGCGATGGGGCACGCCGAGTTTCTGATACAGATTGCg                           >  1:2688065/1‑61 (MQ=255)
                                            gCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCg                           >  1:640852/1‑61 (MQ=255)
                                            gCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCg                           >  1:1134525/1‑61 (MQ=255)
                                            gCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCg                           >  1:672781/1‑61 (MQ=255)
                                            gCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCg                           >  1:1336694/1‑61 (MQ=255)
                                            gCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCg                           >  1:1258624/1‑61 (MQ=255)
                                            gCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCg                           >  1:1259403/1‑61 (MQ=255)
                                            gCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCg                           >  1:801460/1‑61 (MQ=255)
                                            gCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCg                           >  1:1886445/1‑61 (MQ=255)
                                            gCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCg                           >  1:2859115/1‑61 (MQ=255)
                                            gCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCg                           >  1:1377208/1‑61 (MQ=255)
                                            gCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCg                           >  1:1458633/1‑61 (MQ=255)
                                            gCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCg                   >  1:1317318/1‑69 (MQ=255)
                                            gCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCg                   >  1:2780871/1‑69 (MQ=255)
                                                      ttgtACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGAtggt         >  1:2655076/1‑69 (MQ=255)
                                                      ttgtACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGAtggt         >  1:1833354/1‑69 (MQ=255)
                                                      ttgtACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGAtggt         >  1:887447/1‑69 (MQ=255)
                                                      ttgtACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGAtggt         >  1:1955532/1‑69 (MQ=255)
                                                      ttgtACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGAtggt         >  1:2307154/1‑69 (MQ=255)
                                                      ttgtACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGAtggt         >  1:3314104/1‑69 (MQ=255)
                                                      ttgtACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGAtggt         >  1:525951/1‑69 (MQ=255)
                                                      ttgtACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGAtggt         >  1:3416688/1‑69 (MQ=255)
                                                      ttgtACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGAtggt         >  1:3027345/1‑69 (MQ=255)
                                                      ttgtACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGAtggt         >  1:94673/1‑69 (MQ=255)
                                                      ttgtACCGAATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGAtggt         >  1:726427/1‑69 (MQ=255)
                                                        gtACCGCGGCCTGACGGTGGGCGACACCGAGTTTTTGGTACAGATTGCGGATATGCGTCTTGAtggtgg       >  1:2157443/1‑69 (MQ=255)
                                                        gtACCGCGGCCTGACGGTGGGCGACACCGAGTTTTTGGTACAGATTGCGGATATGCGTCTTGAtggtgg       >  1:2053725/1‑69 (MQ=255)
                                                        gtACCGCGGCCTGACGGTGGGCGACACCGAGTTTTTGGTACAGATTGCGGATATGCGTCTTGAtggtgg       >  1:932243/1‑69 (MQ=255)
                                                        gtACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGAtggtg        <  1:1497569/68‑1 (MQ=255)
                                                             gCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATTCGTTTTGATGGTGGTTGcc  >  1:709264/1‑69 (MQ=255)
                                                             gCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGATGGTGGTTGcc  >  1:88386/1‑69 (MQ=255)
                                                             gCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGATGGTGGTTGcc  >  1:3060153/1‑69 (MQ=255)
                                                              cATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGATGGTGGTTGcc  >  1:1924159/1‑68 (MQ=255)
                                                               |                                                                  
ATCCGGCTAAACTTACACGCCGTACCCCATCATCTTCAGCAATTGCTGGGCGTGTTGTACCGCATCCTGGCGATGGGCCACGCCGAGTTTCTGATACAGATTGCGGATATGCGTTTTGATGGTGGTTGCC  >  minE/2665294‑2665423

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: