| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,666,200 | C→T | 43.0% | Q604Q (CAG→CAA) | malT ← | DNA‑binding transcriptional activator, maltotriose‑ATP‑binding |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,666,200 | 0 | C | T | 43.0% | 25.7 / 57.6 | 79 | Q604Q (CAG→CAA) | malT | DNA‑binding transcriptional activator, maltotriose‑ATP‑binding |
| Reads supporting (aligned to +/- strand): ref base C (28/17); new base T (17/17); total (45/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.60e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.97e-01 | |||||||||||
GCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGCCGACGCTTCGGCTTCATCCAGCCGCGCCCAGG > minE/2666150‑2666267 | gCCAGCGAGCATTGAATCAACATTGCCAGGTACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:2386031/69‑1 (MQ=255)gCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:2695990/69‑1 (MQ=255)gCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:50477/69‑1 (MQ=255)gCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:3213876/69‑1 (MQ=255)gCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:1523344/69‑1 (MQ=255)gCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:1904731/69‑1 (MQ=255)gCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:1474212/69‑1 (MQ=255)gCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:3161253/69‑1 (MQ=255)gCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:3078077/69‑1 (MQ=255)gCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:2092193/69‑1 (MQ=255)gCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:1359047/69‑1 (MQ=255)gCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:2513222/69‑1 (MQ=255)gCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:1284509/69‑1 (MQ=255)gCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:1218162/69‑1 (MQ=255)gCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:2759956/69‑1 (MQ=255) ccAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:296750/68‑1 (MQ=255) cAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTc < 1:987047/69‑1 (MQ=255) cAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTc < 1:1667061/69‑1 (MQ=255) cAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTc < 1:650762/69‑1 (MQ=255) gAATCAACATTGGCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTc < 1:1467406/58‑1 (MQ=255) gAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTc < 1:459030/58‑1 (MQ=255) gAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTc < 1:136463/58‑1 (MQ=255) gAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTc < 1:829870/58‑1 (MQ=255) gAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTc < 1:1525736/58‑1 (MQ=255) gAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTc < 1:1820341/58‑1 (MQ=255) gAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTa > 1:1856779/1‑68 (MQ=255) gAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTAc > 1:2871727/1‑69 (MQ=255) gAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTAc > 1:2432659/1‑69 (MQ=255) gAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTAc > 1:2945473/1‑69 (MQ=255) gAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTAc > 1:3157174/1‑69 (MQ=255) gAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTAc > 1:578343/1‑69 (MQ=255) gAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTAc > 1:3321799/1‑69 (MQ=255) gAATCAACATTGACAGTCACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACt < 1:1411680/56‑1 (MQ=255) aaTGAACATTGCGAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAATACTTc < 1:2146522/57‑1 (MQ=255) aaTCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTc < 1:437264/57‑1 (MQ=255) tCAACATTGCCAGGCACTGAAGCTGTTGCTGTGTCTGATAAGACGACAAGACTTCAATCCCGCTAcgcg < 1:890331/69‑1 (MQ=255) tCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTAcgcg < 1:3169235/69‑1 (MQ=255) tCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTAcgcg < 1:385516/69‑1 (MQ=255) cAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTAcgcg < 1:1910860/68‑1 (MQ=255) aaCATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCa > 1:1818356/1‑54 (MQ=255) aaCATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGcc > 1:2390655/1‑69 (MQ=255) aaCATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGcc > 1:2905173/1‑69 (MQ=255) aaCATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGcc > 1:79398/1‑69 (MQ=255) aaCATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGcc > 1:338429/1‑69 (MQ=255) aaCATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGcc > 1:495737/1‑69 (MQ=255) aaCATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGcc > 1:2610825/1‑69 (MQ=255) aaCATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGcc > 1:259683/1‑69 (MQ=255) aaCATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGcc > 1:1321096/1‑69 (MQ=255) aaCATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGcc > 1:1587902/1‑69 (MQ=255) aaCATAGCCAGGCACTGAAGCTGTTGCTGTGGCTGAAAAGACGACAAGACTTc > 1:2040625/1‑53 (MQ=255) gCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCGCGCTACGCGCCGACGCt > 1:2940912/1‑69 (MQ=255) gCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGCCGACGCt > 1:57468/1‑69 (MQ=255) gCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGCCGACGCt > 1:1553251/1‑69 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGAc > 1:1432760/1‑38 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCt > 1:2023820/1‑63 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:1080210/1‑68 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:1551799/1‑68 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:2379745/1‑68 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:2689766/1‑68 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:1716894/1‑68 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:437052/1‑68 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:1761202/1‑68 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:2380735/1‑68 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:3322206/1‑68 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:602542/1‑68 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:3179513/1‑68 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:1463283/1‑68 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:316795/1‑68 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:2039165/1‑68 (MQ=255) cACTGAAGCTGTTGCTGTGGTTGATAAGACGACAAGACTTCAATCCCGCTGCGCGCCGACGCTTCGGc > 1:769342/1‑68 (MQ=255) gAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCaa > 1:2974468/1‑39 (MQ=255) gAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGCCGACGCTTCGGCTTCa > 1:2980733/1‑68 (MQ=255) gtgGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGCCGACGCTTCGGCTTCATCCAGCCGCGcc < 1:1046053/68‑1 (MQ=255) gtgGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGCCGACGCTTCGGCTTCATCCAGCCGCGcc < 1:1833914/68‑1 (MQ=255) tcTGATAAGACGACAAGACTTCAATCCCGCTACGCGCCGACGCTTCGGCTTCATCCAGCCGCGCCCAgg > 1:1769482/2‑69 (MQ=255) gCTGATAAGACGACAAGACTTCAATCCCGCTACGCGCTGACGCTTCGGCTTCATCCAGCCGCGCCCAgg > 1:1768852/1‑69 (MQ=255) gCTGATAAGACGACAAGACTTCAATCCCGCTACGCGCCGACGCTTCGGCTTCATCCAGCCGCGCCCAgg > 1:1073024/1‑69 (MQ=255) gCTGATAAGACGACAAGACTTCAATCCCGCTACGCGCCGACGCTTCGGCTTCATCCAGCCGCGCCCAgg > 1:152224/1‑69 (MQ=255) gCTGATAAGACGACAAGACTTCAATCCCGCTACGCGCCGACGCTTCGGCTTCATCCAGCCGCGCCCAgg > 1:1768880/1‑69 (MQ=255) gCTGATAAGACGACAAGACTTCAATCCCGCTACGCGCCGACGCTTCGGCTTCATCCAGCCGCGCCCAgg > 1:2345833/1‑69 (MQ=255) | GCCAGCGAGCATTGAATCAACATTGCCAGGCACTGAAGCTGTTGCTGTGGCTGATAAGACGACAAGACTTCAATCCCGCTACGCGCCGACGCTTCGGCTTCATCCAGCCGCGCCCAGG > minE/2666150‑2666267 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |