| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,669,963 | C→T | 36.2% | N447N (AAC→AAT) | malP → | maltodextrin phosphorylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,669,963 | 0 | C | T | 36.2% | 60.5 / 53.5 | 91 | N447N (AAC→AAT) | malP | maltodextrin phosphorylase |
| Reads supporting (aligned to +/- strand): ref base C (4/54); new base T (9/24); total (13/78) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.18e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.09e-01 | |||||||||||
GGTGAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAACCCGGCACTGGCGGCTCTGTTGG > minE/2669909‑2670030 | ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:994992/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:2362719/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:2654918/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:1910151/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:1909871/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:1891700/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:2898169/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:1720891/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:3263959/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:350799/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:373200/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:726395/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:1257060/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:784114/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:1221557/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:1141057/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:752749/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:1362787/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACgg < 1:1204452/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:3131060/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:2184058/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:2167519/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:835481/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:1988558/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:2669164/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:2967355/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:3227574/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:1671419/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:370148/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:1512101/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:593534/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:674264/66‑1 (MQ=255)ggtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:1271789/66‑1 (MQ=255) gtgAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:2074687/65‑1 (MQ=255) gAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACGGTATTa > 1:801642/1‑68 (MQ=255) gAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACGGTATTa > 1:2570120/1‑68 (MQ=255) gAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACGGTATTAc > 1:3306644/1‑69 (MQ=255) gAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACGGTATTAc > 1:82977/1‑69 (MQ=255) gAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACGGTATTAc > 1:560271/1‑69 (MQ=255) gAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACGGTATTAc > 1:1060802/1‑69 (MQ=255) gAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACGGTATTAc > 1:1070110/1‑69 (MQ=255) gAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACGGTATTAc > 1:1837314/1‑69 (MQ=255) gAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACGGTATTAc > 1:1212268/1‑69 (MQ=255) aGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACGGTATTAccc < 1:1530810/68‑1 (MQ=255) aGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACGGTATTAccc < 1:890409/68‑1 (MQ=255) aGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACGGTATTAccc < 1:2588136/68‑1 (MQ=255) aGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAATGTCACCAACGGTATTAccc < 1:2610328/68‑1 (MQ=255) tGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGt > 1:952935/1‑68 (MQ=255) tGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTc > 1:1940984/1‑69 (MQ=255) cccGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:2859528/51‑1 (MQ=255) cccGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:361553/51‑1 (MQ=255) cccGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:1519438/51‑1 (MQ=255) cccGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:1654046/51‑1 (MQ=255) cccGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:523620/51‑1 (MQ=255) cccGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:1724389/51‑1 (MQ=255) cccGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:742155/51‑1 (MQ=255) cccGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:2788821/51‑1 (MQ=255) cccGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:1135337/51‑1 (MQ=255) cccGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:2164944/51‑1 (MQ=255) cccGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:2517669/51‑1 (MQ=255) cccGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:848745/51‑1 (MQ=255) cccGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:2186278/51‑1 (MQ=255) cccGGAATATCACCAGCTATGGCAGAACAAATTCCATAACGTCACCAACgg < 1:1132867/51‑1 (MQ=255) atatCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCa > 1:2178392/1‑68 (MQ=255) atCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAAc < 1:2264209/69‑1 (MQ=255) atCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAAc < 1:1403871/69‑1 (MQ=255) atCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAAc < 1:1428477/69‑1 (MQ=255) atCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAAc < 1:650464/69‑1 (MQ=255) atCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAAc < 1:380413/69‑1 (MQ=255) atCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAAc < 1:1490512/69‑1 (MQ=255) atCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAAc < 1:1581784/69‑1 (MQ=255) atCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAAc < 1:2296410/69‑1 (MQ=255) atCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAAc < 1:2379056/69‑1 (MQ=255) atCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAAc < 1:320222/69‑1 (MQ=255) tCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCa < 1:2469502/65‑1 (MQ=255) aGCTATGGCCGATCTAATTCCATAACGTCACCAACTGTATTACCCCACGTCGCTGGATCATAc < 1:98030/63‑1 (MQ=38) aGCTATGGCCGAACAAATTCCATAACGTCACCAACgg < 1:2893139/37‑1 (MQ=255) tATGGCCGAACAAATTCCATAATGTCACCAACGGTATTAccc < 1:3294823/42‑1 (MQ=255) tATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAAcc > 1:1441688/1‑69 (MQ=255) gCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAACCCgg < 1:1456142/68‑1 (MQ=255) gCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAACCCgg < 1:1689453/68‑1 (MQ=255) gCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAACCCgg < 1:3038885/68‑1 (MQ=255) gCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAACCCgg < 1:3353649/68‑1 (MQ=255) gCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAACCCgg < 1:2893197/68‑1 (MQ=255) gCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAACCCgg < 1:1997646/68‑1 (MQ=255) gCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAACCCgg < 1:2625883/68‑1 (MQ=255) gCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAACCCgg < 1:1101230/68‑1 (MQ=255) gCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAACCCgg < 1:2395014/68‑1 (MQ=255) gCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAACCCgg < 1:947378/68‑1 (MQ=255) gCCGAACAAATTCCATAACGTCACCAACGGTATTAACCCACGTCGCTGGATCAAACAGTGCAACCCgg < 1:1005888/68‑1 (MQ=255) aCGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAACCCGGCACTGGCGGCTCTGTTgg < 1:1846636/69‑1 (MQ=255) cGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAACCCgg < 1:768636/50‑1 (MQ=255) | GGTGAAAGATCTGTTCCCGGAATATCACCAGCTATGGCCGAACAAATTCCATAACGTCACCAACGGTATTACCCCACGTCGCTGGATCAAACAGTGCAACCCGGCACTGGCGGCTCTGTTGG > minE/2669909‑2670030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |